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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
UNC5B
ENSSSCG00000010276
ENSG00000107731
Netrin receptor UNC5B precursor
Tissue enhanced
Detected in many
male glands:
52.4
UNC5D
ENSSSCG00000015830
ENSG00000156687
Unc-5 netrin receptor D
Tissue enhanced
Detected in many
brain:
18.0
kidney:
15.8
UNG
ENSSSCG00000009938
ENSG00000076248
Uracil DNA glycosylase
Tissue enhanced
Detected in all
male glands:
52.5
UPK2
ENSSSCG00000015100
ENSG00000110375
Uroplakin-2 precursor
Group enriched
Detected in some
ductus deferens:
75.3
urinary bladder:
113.4
UPK3A
ENSSSCG00000031423
ENSG00000100373
Uroplakin 3A
Low tissue specificity
Detected in all
UPP1
ENSSSCG00000030388
ENSG00000183696
Uridine phosphorylase 1
Tissue enhanced
Detected in many
male glands:
66.1
mouth:
19.9
UQCR10
ENSSSCG00000024550
ENSG00000184076
Cytochrome b-c1 complex subunit 9
Tissue enhanced
Detected in all
skeletal muscle:
106.0
UQCRC1
ENSSSCG00000011356
ENSG00000010256
Ubiquinol-cytochrome c reductase core protein 1
Tissue enhanced
Detected in all
heart:
101.2
skeletal muscle:
104.1
UQCRQ
ENSSSCG00000014289
ENSG00000164405
Ubiquinol-cytochrome c reductase complex III subunit VII
Tissue enhanced
Detected in all
choroid plexus:
69.6
heart:
66.3
skeletal muscle:
67.5
URGCP
ENSSSCG00000040519
ENSG00000106608
Upregulator of cell proliferation
Low tissue specificity
Detected in all
USP54
ENSSSCG00000010302
ENSG00000166348
Ubiquitin specific peptidase 54
Tissue enhanced
Detected in all
brain:
41.8
male glands:
45.2
UTP20
ENSSSCG00000000869
ENSG00000120800
UTP20, small subunit processome component
Tissue enhanced
Detected in all
male glands:
45.7
UXS1
ENSSSCG00000008143
ENSG00000115652
UDP-glucuronic acid decarboxylase 1 isoform a
Low tissue specificity
Detected in all
UXT
ENSSSCG00000012280
ENSG00000126756
Ubiquitously expressed prefoldin like chaperone
Tissue enhanced
Detected in all
male glands:
42.0
VAMP1
ENSSSCG00000000703
ENSG00000139190
Vesicle associated membrane protein 1
Tissue enriched
Detected in many
brain:
145.7
VAMP7
ENSSSCG00000029615
ENSG00000124333
Vesicle-associated membrane protein 7
Low tissue specificity
Detected in all
VAMP8
ENSSSCG00000022820
ENSG00000118640
Vesicle associated membrane protein 8
Low tissue specificity
Detected in all
VANGL2
ENSSSCG00000006383
ENSG00000162738
VANGL planar cell polarity protein 2
Low tissue specificity
Detected in many
VASH2
ENSSSCG00000015589
ENSG00000143494
Vasohibin 2
Tissue enhanced
Detected in many
testis:
40.0
VASN
ENSSSCG00000025561
ENSG00000168140
Vasorin
Low tissue specificity
Detected in many
VAV2
ENSSSCG00000005743
ENSG00000160293
Vav guanine nucleotide exchange factor 2
Low tissue specificity
Detected in many
VCAM1
ENSSSCG00000006862
ENSG00000162692
Vascular cell adhesion protein 1 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
98.3
VDAC3
ENSSSCG00000007026
ENSG00000078668
Voltage-dependent anion-selective channel protein 3
Tissue enhanced
Detected in all
skeletal muscle:
79.2
testis:
70.9
VEGFA
ENSSSCG00000001695
ENSG00000112715
Vascular endothelial growth factor A precursor
Tissue enhanced
Detected in all
thyroid gland:
94.9
VIPR1
ENSSSCG00000011280
ENSG00000114812
Vasoactive intestinal polypeptide receptor 1 precursor
Tissue enhanced
Detected in all
male glands:
92.6
VMP1
ENSSSCG00000017668
ENSG00000062716
Vacuole membrane protein 1
Tissue enhanced
Detected in all
ovary:
100.7
VOPP1
ENSSSCG00000032734
ENSG00000154978
VOPP1, WBP1/VOPP1 family member
Tissue enhanced
Detected in many
retina:
73.7
VPS26A
ENSSSCG00000010250
ENSG00000122958
VPS26, retromer complex component A
Low tissue specificity
Detected in all
VPS29
ENSSSCG00000009823
ENSG00000111237
VPS29, retromer complex component
Low tissue specificity
Detected in all
VPS35
ENSSSCG00000026239
ENSG00000069329
VPS35, retromer complex component
Low tissue specificity
Detected in all
VPS9D1
ENSSSCG00000022310
ENSG00000075399
VPS9 domain containing 1
Low tissue specificity
Detected in all
VSIG4
ENSSSCG00000035170
ENSG00000155659
V-set and immunoglobulin domain-containing protein 4 precursor
Tissue enhanced
Detected in many
adipose tissue:
25.2
synovial tissue:
65.3
VWA3B
ENSSSCG00000033394
ENSG00000168658
Von Willebrand factor A domain containing 3B
Tissue enhanced
Detected in many
liver:
26.6
testis:
46.7
VWCE
ENSSSCG00000013093
ENSG00000167992
Von Willebrand factor C and EGF domains
Group enriched
Detected in all
cartilage:
51.0
liver:
41.2
VWF
ENSSSCG00000000712
ENSG00000110799
Von Willebrand factor precursor
Low tissue specificity
Detected in all
WASF3
ENSSSCG00000009300
ENSG00000132970
WAS protein family member 3
Low tissue specificity
Detected in all
WASHC4
ENSSSCG00000000840
ENSG00000136051
WASH complex subunit 4
Low tissue specificity
Detected in all
WDFY1
ENSSSCG00000025174
ENSG00000085449
WD repeat and FYVE domain-containing protein 1
Low tissue specificity
Detected in all
WDPCP
ENSSSCG00000032229
ENSG00000143951
WD repeat containing planar cell polarity effector
Tissue enhanced
Detected in all
choroid plexus:
27.7
WDR17
ENSSSCG00000015766
ENSG00000150627
WD repeat domain 17
Tissue enhanced
Detected in many
male glands:
21.0
retina:
52.1
WDR35
ENSSSCG00000008604
ENSG00000118965
WD repeat domain 35
Tissue enhanced
Detected in all
adrenal gland:
59.0
WDR36
ENSSSCG00000014199
ENSG00000134987
WD repeat domain 36
Low tissue specificity
Detected in all
WDR48
ENSSSCG00000011261
ENSG00000114742
WD repeat domain 48
Tissue enhanced
Detected in all
testis:
51.1
WDR61
ENSSSCG00000001757
ENSG00000140395
WD repeat domain 61
Tissue enhanced
Detected in all
lens:
45.0
WDR75
ENSSSCG00000016036
ENSG00000115368
WD repeat domain 75
Low tissue specificity
Detected in all
WDR86
ENSSSCG00000016437
ENSG00000187260
WD repeat domain 86
Low tissue specificity
Detected in many
WFDC1
ENSSSCG00000023837
ENSG00000103175
WAP four-disulfide core domain protein 1 precursor
Tissue enhanced
Detected in many
penis:
74.2
smooth muscle:
55.4
WFDC2
ENSSSCG00000033003
ENSG00000101443
WAP four-disulfide core domain protein 2
Tissue enhanced
Detected in many
endometrium:
69.1
upper respiratory system:
173.1
WFS1
ENSSSCG00000032452
ENSG00000109501
Wolframin ER transmembrane glycoprotein
Tissue enriched
Detected in all
brain:
93.7
WHRN
ENSSSCG00000005490
ENSG00000095397
Whirlin
Tissue enhanced
Detected in all
lymphoid tissue:
29.4
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