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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Digestive system diseases
Endocrine and metabolic diseases
Immune system diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
Urinary system diseases
Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000005453
Thioredoxin
Tissue enhanced
Detected in all
ovary:
149.3
na
ENSSSCG00000005457
ENSG00000198121
Lysophosphatidic acid receptor 1
Tissue enhanced
Detected in many
brain:
47.5
cartilage:
77.7
na
ENSSSCG00000005481
ENSG00000138835
Tissue enhanced
Detected in many
cartilage:
62.7
na
ENSSSCG00000005518
N-acetyllactosaminide alpha-1,3-galactosyltransferase
Low tissue specificity
Detected in many
na
ENSSSCG00000005656
Protein SET
Low tissue specificity
Detected in all
na
ENSSSCG00000005768
Low tissue specificity
Detected in all
na
ENSSSCG00000005922
Tissue enhanced
Detected in many
male glands:
13.9
skin:
18.3
na
ENSSSCG00000005982
ENSG00000156795
Tissue enhanced
Detected in all
brain:
27.6
na
ENSSSCG00000006008
Low tissue specificity
Detected in all
na
ENSSSCG00000006062
14-3-3 protein zeta/delta
Low tissue specificity
Detected in all
na
ENSSSCG00000006081
60S ribosomal protein L30
Tissue enhanced
Detected in all
male glands:
162.6
na
ENSSSCG00000006101
ENSG00000197275,ENSG00000265817
Tissue enhanced
Detected in many
pineal gland:
111.6
retina:
39.3
na
ENSSSCG00000006304
ENSG00000143158
Tissue enhanced
Detected in all
choroid plexus:
55.0
na
ENSSSCG00000006344
ENSG00000254706
Tissue enhanced
Detected in many
cartilage:
108.3
male glands:
71.2
na
ENSSSCG00000006363
ENSG00000143222
Tissue enhanced
Detected in all
male glands:
111.3
na
ENSSSCG00000006418
Tissue enhanced
Detected in all
lymphoid tissue:
79.0
na
ENSSSCG00000006491
ENSG00000160781
Progestin and adipoQ receptor family member 6
Tissue enhanced
Detected in many
brain:
79.9
vagus nerve:
25.7
na
ENSSSCG00000006531
ENSG00000143590,ENSG00000251246
Tissue enhanced
Detected in many
brain:
30.4
skin:
39.7
na
ENSSSCG00000006581
ENSG00000188643
Protein S100-A16
Tissue enhanced
Detected in all
brain:
124.8
mouth:
84.1
na
ENSSSCG00000006703
ENSG00000131791
5'-AMP-activated protein kinase subunit beta-2
Tissue enhanced
Detected in all
male glands:
62.5
skeletal muscle:
36.3
na
ENSSSCG00000006719
ENSG00000203857,ENSG00000203859
3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase 3-beta-hydroxy-Delta(5)-steroid dehydrogenase Steroid Delta-isomerase
Group enriched
Detected in some
adrenal gland:
375.8
ovary:
293.2
na
ENSSSCG00000006851
Tissue enhanced
Detected in all
lymphoid tissue:
43.9
na
ENSSSCG00000007082
ENSG00000125879
Tissue enriched
Detected in some
cornea:
111.0
na
ENSSSCG00000007085
Destrin
Tissue enhanced
Detected in all
smooth muscle:
163.5
na
ENSSSCG00000007216
ENSG00000215547
Group enriched
Detected in some
epididymis:
43.3
male glands:
79.2
na
ENSSSCG00000007743
ENSG00000106153
Low tissue specificity
Detected in all
na
ENSSSCG00000007749
Low tissue specificity
Detected in all
na
ENSSSCG00000007795
ENSG00000179958
Tissue enhanced
Detected in all
liver:
55.5
na
ENSSSCG00000007858
ENSG00000066813,ENSG00000183747
Group enriched
Detected in all
kidney:
99.1
liver:
28.1
na
ENSSSCG00000007874
ENSG00000103222
Tissue enhanced
Detected in all
male glands:
50.7
na
ENSSSCG00000008106
Low tissue specificity
Detected in all
na
ENSSSCG00000008170
60S ribosomal protein L31
Low tissue specificity
Detected in all
na
ENSSSCG00000008183
ENSG00000185414
Tissue enhanced
Detected in all
lens:
40.1
na
ENSSSCG00000008222
ENSG00000115561,ENSG00000249884
Tissue enhanced
Detected in all
male glands:
107.9
na
ENSSSCG00000008433
Tissue enhanced
Detected in all
brain:
178.2
male glands:
222.0
na
ENSSSCG00000008485
ENSG00000004455
Low tissue specificity
Detected in all
na
ENSSSCG00000008576
ENSG00000138101
Tissue enhanced
Detected in all
male glands:
91.3
na
ENSSSCG00000008599
Tissue enhanced
Detected in all
ductus deferens:
36.1
na
ENSSSCG00000008898
ENSG00000171476
Homeodomain-only protein
Tissue enhanced
Detected in many
cornea:
62.1
lens:
122.1
na
ENSSSCG00000008954
Tissue enhanced
Detected in many
cartilage:
86.3
liver:
86.3
na
ENSSSCG00000009060
ENSG00000196782
Tissue enhanced
Detected in all
male glands:
35.4
na
ENSSSCG00000009146
Low tissue specificity
Detected in all
na
ENSSSCG00000009221
ENSG00000152591
Dentin sialophosphoprotein preproprotein
Tissue enhanced
Detected in all
liver:
30.9
na
ENSSSCG00000009303
Low tissue specificity
Detected in all
na
ENSSSCG00000009489
Tissue enriched
Detected in many
cartilage:
170.3
na
ENSSSCG00000009500
Claudin-10 precursor
Tissue enhanced
Detected in many
esophagus:
80.3
fallopian tube:
22.7
kidney:
25.1
upper respiratory system:
25.0
na
ENSSSCG00000009631
ENSG00000134020
Phosphatidylethanolamine-binding protein 4 precursor
Tissue enriched
Detected in many
epididymis:
225.1
na
ENSSSCG00000009746
Tissue enhanced
Detected in all
lens:
77.2
na
ENSSSCG00000009772
ENSG00000086598
Tissue enhanced
Detected in all
male glands:
135.4
na
ENSSSCG00000009851
Tissue enhanced
Detected in all
lens:
129.1
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