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Chromosome
1
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3366 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DNAH7
ENSSSCG00000032814
ENSG00000118997
Dynein axonemal heavy chain 7
Tissue enhanced
Detected in some
epididymis:
16.1
fallopian tube:
27.7
testis:
17.7
upper respiratory system:
16.9
DNAJA4
ENSSSCG00000037646
ENSG00000140403
DnaJ homolog subfamily A member 4
Low tissue specificity
Detected in all
DNAJB1
ENSSSCG00000013784
ENSG00000132002
DnaJ homolog subfamily B member 1
Low tissue specificity
Detected in all
DNAJB14
ENSSSCG00000009177
ENSG00000164031
DnaJ heat shock protein family (Hsp40) member B14
Low tissue specificity
Detected in all
DNAJC10
ENSSSCG00000016017
ENSG00000077232
DnaJ heat shock protein family (Hsp40) member C10
Tissue enriched
Detected in all
male glands:
170.0
DNAJC19
ENSSSCG00000011770
ENSG00000205981
Mitochondrial import inner membrane translocase subunit TIM14
Low tissue specificity
Detected in all
DNAJC22
ENSSSCG00000000198
ENSG00000178401
DnaJ heat shock protein family (Hsp40) member C22
Tissue enhanced
Detected in many
liver:
31.2
male glands:
31.4
DNAJC25
ENSSSCG00000005460
ENSG00000059769
DnaJ heat shock protein family (Hsp40) member C25
Low tissue specificity
Detected in all
DNAJC6
ENSSSCG00000003807
ENSG00000116675
Putative tyrosine-protein phosphatase auxilin
Tissue enhanced
Detected in many
brain:
54.6
lens:
18.8
pineal gland:
28.1
DNASE1
ENSSSCG00000036527
ENSG00000213918
Deoxyribonuclease-1 precursor
Low tissue specificity
Detected in all
DNASE1L2
ENSSSCG00000024587
ENSG00000167968
Deoxyribonuclease 1 like 2
Low tissue specificity
Detected in many
DNMBP
ENSSSCG00000010544
ENSG00000107554
Dynamin binding protein
Tissue enriched
Detected in all
lens:
96.5
DNPH1
ENSSSCG00000026568
ENSG00000112667
2'-deoxynucleoside 5'-phosphate N-hydrolase 1
Low tissue specificity
Detected in all
DOCK1
ENSSSCG00000035045
ENSG00000150760
Dedicator of cytokinesis 1
Low tissue specificity
Detected in all
DOCK2
ENSSSCG00000017008
ENSG00000134516
Dedicator of cytokinesis 2
Tissue enhanced
Detected in many
lymphoid tissue:
51.5
stomach:
28.8
DOCK5
ENSSSCG00000009650
ENSG00000147459
Dedicator of cytokinesis 5
Tissue enriched
Detected in many
lens:
100.0
DOCK6
ENSSSCG00000038604
ENSG00000130158
Dedicator of cytokinesis 6
Low tissue specificity
Detected in many
DOCK8
ENSSSCG00000005240
ENSG00000107099
Dedicator of cytokinesis 8
Tissue enhanced
Detected in many
lymphoid tissue:
48.5
DOK1
ENSSSCG00000008265
ENSG00000115325
Docking protein 1
Tissue enhanced
Detected in many
cartilage:
48.4
DOK7
ENSSSCG00000008702
ENSG00000175920
Docking protein 7
Tissue enhanced
Detected in many
brain:
16.1
heart:
24.7
skeletal muscle:
13.7
DOPEY2
ENSSSCG00000012054
ENSG00000142197
Dopey family member 2
Tissue enriched
Detected in many
male glands:
125.4
DOT1L
ENSSSCG00000013457
ENSG00000104885
DOT1 like histone lysine methyltransferase
Tissue enhanced
Detected in all
testis:
58.9
DPF3
ENSSSCG00000002333
ENSG00000205683
Double PHD fingers 3
Tissue enhanced
Detected in many
brain:
29.0
liver:
32.4
DPH3
ENSSSCG00000011196
DPH3 homolog
Tissue enhanced
Detected in all
lens:
48.6
DPM1
ENSSSCG00000034952
ENSG00000000419
Dolichol-phosphate mannosyltransferase subunit 1
Low tissue specificity
Detected in all
DPM3
ENSSSCG00000006528
ENSG00000179085
Dolichyl-phosphate mannosyltransferase subunit 3
Tissue enhanced
Detected in many
pineal gland:
14.0
DPP4
ENSSSCG00000015894
ENSG00000197635
Dipeptidyl peptidase 4 Dipeptidyl peptidase 4 membrane form Dipeptidyl peptidase 4 soluble form
Tissue enhanced
Detected in many
liver:
49.9
salivary gland:
49.4
DPY30
ENSSSCG00000008516
ENSG00000162961
Protein dpy-30 homolog
Tissue enhanced
Detected in all
lens:
107.0
DPYSL3
ENSSSCG00000036549
ENSG00000113657
Dihydropyrimidinase like 3
Low tissue specificity
Detected in many
DSC3
ENSSSCG00000024800
ENSG00000134762
Desmocollin 3
Tissue enhanced
Detected in many
cornea:
77.5
mouth:
100.5
skin:
50.9
DSG2
ENSSSCG00000022739
ENSG00000046604
Desmoglein 2
Tissue enhanced
Detected in many
large intestine:
62.7
male glands:
37.6
DTNBP1
ENSSSCG00000001062
ENSG00000047579
Dysbindin
Low tissue specificity
Detected in all
DTX3
ENSSSCG00000000449
ENSG00000178498
Deltex E3 ubiquitin ligase 3
Tissue enhanced
Detected in all
male glands:
80.2
DUOX1
ENSSSCG00000004675
ENSG00000137857
Dual oxidase 1 precursor
Tissue enhanced
Detected in many
mouth:
24.9
thyroid gland:
16.7
DUOX2
ENSSSCG00000004678
ENSG00000140279
Dual oxidase 2 precursor
Group enriched
Detected in many
gallbladder:
21.4
large intestine:
37.0
stomach:
52.0
thyroid gland:
72.5
upper respiratory system:
24.4
DUOXA1
ENSSSCG00000004677
ENSG00000140254
Dual oxidase maturation factor 1
Tissue enhanced
Detected in many
mouth:
24.3
stomach:
29.6
thyroid gland:
46.7
DUOXA2
ENSSSCG00000004676
ENSG00000140274
Dual oxidase maturation factor 2
Tissue enhanced
Detected in many
large intestine:
30.1
stomach:
34.1
thyroid gland:
45.4
upper respiratory system:
28.0
DUSP1
ENSSSCG00000016991
ENSG00000120129
Dual specificity protein phosphatase 1
Tissue enhanced
Detected in all
male glands:
173.1
DUSP10
ENSSSCG00000010831
ENSG00000143507
Dual specificity phosphatase 10
Low tissue specificity
Detected in many
DUSP4
ENSSSCG00000015850
ENSG00000120875
Dual specificity phosphatase 4
Tissue enhanced
Detected in many
ovary:
53.6
DUSP5
ENSSSCG00000040815
ENSG00000138166
Dual specificity phosphatase 5
Tissue enhanced
Detected in many
brain:
23.3
ovary:
27.1
DYM
ENSSSCG00000004508
ENSG00000141627
Dymeclin
Low tissue specificity
Detected in all
DYNC1I1
ENSSSCG00000015335
ENSG00000158560
Dynein cytoplasmic 1 intermediate chain 1
Group enriched
Detected in many
brain:
30.5
lens:
119.7
DYNC1I2
ENSSSCG00000015948
ENSG00000077380
Cytoplasmic dynein 1 intermediate chain 2
Low tissue specificity
Detected in all
DYNLRB2
ENSSSCG00000031421
ENSG00000168589
Dynein light chain roadblock-type 2
Tissue enhanced
Detected in many
choroid plexus:
44.0
fallopian tube:
41.6
upper respiratory system:
44.9
DYNLT1
ENSSSCG00000033107
ENSG00000146425
Dynein light chain Tctex-type 1
Tissue enhanced
Detected in all
male glands:
52.6
DYNLT3
ENSSSCG00000028908
ENSG00000165169
Dynein light chain Tctex-type 3
Low tissue specificity
Detected in all
DZANK1
ENSSSCG00000007094
ENSG00000089091
Double zinc ribbon and ankyrin repeat domains 1
Tissue enhanced
Detected in all
brain:
81.4
DZIP1L
ENSSSCG00000027467
ENSG00000158163
DAZ interacting zinc finger protein 1 like
Tissue enhanced
Detected in many
choroid plexus:
47.9
E2F5
ENSSSCG00000006145
ENSG00000133740
E2F transcription factor 5
Tissue enhanced
Detected in many
male glands:
28.1
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