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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
13
14
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16
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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916 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
KIF26B
ENSSSCG00000010879
ENSG00000162849
Kinesin family member 26B
Tissue enhanced
Detected in many
heart:
31.5
kidney:
19.4
KLF5
ENSSSCG00000035101
ENSG00000102554
Krueppel-like factor 5
Tissue enhanced
Detected in many
large intestine:
80.4
stomach:
60.7
upper respiratory system:
64.6
KLHL3
ENSSSCG00000014321
ENSG00000146021
Kelch like family member 3
Tissue enhanced
Detected in many
liver:
27.0
vagus nerve:
19.8
KLK1
ENSSSCG00000024668
Kallikrein-1 precursor
Tissue enriched
Detected in some
salivary gland:
400.8
L1CAM
ENSSSCG00000012787
ENSG00000198910
L1 cell adhesion molecule
Tissue enhanced
Detected in many
ductus deferens:
55.0
kidney:
58.6
vagus nerve:
52.3
LAMB3
ENSSSCG00000015618
ENSG00000196878
Laminin subunit beta 3
Tissue enhanced
Detected in many
thyroid gland:
48.3
LAMC2
ENSSSCG00000015556
ENSG00000058085
Laminin subunit gamma 2
Tissue enhanced
Detected in many
stomach:
44.7
LANCL3
ENSSSCG00000037269
ENSG00000147036
LanC like 3
Tissue enhanced
Detected in many
brain:
13.2
stomach:
9.4
LAPTM5
ENSSSCG00000025034
ENSG00000162511
Lysosomal protein transmembrane 5
Tissue enhanced
Detected in many
lymphoid tissue:
82.6
LEF1
ENSSSCG00000009148
ENSG00000138795
Lymphoid enhancer-binding factor 1
Tissue enriched
Detected in many
lymphoid tissue:
206.1
LGALS3
ENSSSCG00000005055
ENSG00000131981
Galectin-3
Tissue enhanced
Detected in many
large intestine:
168.2
lens:
152.6
LHX6
ENSSSCG00000005530
ENSG00000106852
LIM homeobox 6
Tissue enhanced
Detected in many
cartilage:
32.4
LIPH
ENSSSCG00000011793
ENSG00000163898
Lipase H
Tissue enhanced
Detected in many
ovary:
13.1
stomach:
28.9
LMO2
ENSSSCG00000013307
ENSG00000135363
LIM domain only 2
Low tissue specificity
Detected in many
LMTK3
ENSSSCG00000030561
ENSG00000142235
Lemur tyrosine kinase 3
Tissue enhanced
Detected in some
brain:
24.9
retina:
7.8
LMX1B
ENSSSCG00000035968
ENSG00000136944
LIM homeobox transcription factor 1-beta
Tissue enhanced
Detected in some
breast:
15.4
cornea:
29.1
LRIT3
ENSSSCG00000009135
ENSG00000183423
Leucine rich repeat, Ig-like and transmembrane domains 3
Tissue enriched
Detected in many
retina:
49.8
LRP2
ENSSSCG00000040746
ENSG00000081479
LDL receptor related protein 2
Tissue enriched
Detected in many
kidney:
179.2
LRRC32
ENSSSCG00000014869
ENSG00000137507
Leucine rich repeat containing 32
Tissue enhanced
Detected in many
mesothelial tissue:
43.0
LRRC70
ENSSSCG00000037608
ENSG00000186105
Leucine rich repeat containing 70
Low tissue specificity
Detected in many
LRRC75B
ENSSSCG00000010057
ENSG00000178026
Leucine rich repeat containing 75B
Tissue enhanced
Detected in many
lens:
17.5
male glands:
13.8
LRRC8B
ENSSSCG00000037101
ENSG00000197147
Leucine rich repeat containing 8 VRAC subunit B
Tissue enhanced
Detected in many
brain:
39.9
testis:
57.6
LSMEM2
ENSSSCG00000011401
ENSG00000179564
Leucine rich single-pass membrane protein 2
Tissue enhanced
Detected in many
heart:
22.2
vagus nerve:
20.8
LTBP1
ENSSSCG00000008510
ENSG00000049323
Latent transforming growth factor beta binding protein 1
Tissue enhanced
Detected in many
cartilage:
91.5
ovary:
106.5
LY75
ENSSSCG00000021956
ENSG00000054219,ENSG00000248672
Lymphocyte antigen 75 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
56.9
MAF
ENSSSCG00000040607
ENSG00000178573
MAF bZIP transcription factor
Tissue enhanced
Detected in all
lens:
134.2
MAGI2
ENSSSCG00000031780
ENSG00000187391
Membrane associated guanylate kinase, WW and PDZ domain containing 2
Tissue enhanced
Detected in many
brain:
31.7
lens:
39.6
MAL2
ENSSSCG00000006003
ENSG00000147676
Protein MAL2
Tissue enhanced
Detected in many
brain:
38.7
MAP6
ENSSSCG00000014860
ENSG00000171533
Microtubule associated protein 6
Tissue enhanced
Detected in many
brain:
25.3
pituitary gland:
16.7
retina:
16.4
MAPT
ENSSSCG00000017311
ENSG00000186868
Microtubule associated protein tau
Tissue enhanced
Detected in all
brain:
52.7
MARC2
ENSSSCG00000010826
ENSG00000117791
Mitochondrial amidoxime reducing component 2
Tissue enhanced
Detected in all
kidney:
53.3
liver:
81.3
MAST3
ENSSSCG00000013895
ENSG00000099308
Microtubule associated serine/threonine kinase 3
Tissue enhanced
Detected in all
brain:
42.6
MCOLN3
ENSSSCG00000023745
ENSG00000055732
Mucolipin 3
Group enriched
Detected in many
kidney:
28.1
lung:
10.5
thyroid gland:
14.8
MELTF
ENSSSCG00000011837
ENSG00000163975
Melanotransferrin
Group enriched
Detected in some
cartilage:
56.7
cervix:
15.2
testis:
18.7
MEP1B
ENSSSCG00000003732
ENSG00000141434
Meprin A subunit beta
Tissue enhanced
Detected in some
kidney:
14.4
small intestine:
35.5
MFGE8
ENSSSCG00000001834
ENSG00000140545
Lactadherin precursor
Tissue enriched
Detected in many
cartilage:
239.5
MGMT
ENSSSCG00000010756
ENSG00000170430
O-6-methylguanine-DNA methyltransferase
Low tissue specificity
Detected in all
MIOX
ENSSSCG00000023749
ENSG00000100253
Inositol oxygenase
Group enriched
Detected in many
kidney:
100.7
thyroid gland:
68.8
MLXIPL
ENSSSCG00000007710
ENSG00000009950
MLX interacting protein like
Tissue enhanced
Detected in many
adipose tissue:
74.7
liver:
76.6
MME
ENSSSCG00000011723
ENSG00000196549
Membrane metalloendopeptidase
Tissue enhanced
Detected in many
choroid plexus:
43.9
endometrium:
40.3
kidney:
60.8
ovary:
39.6
MMP19
ENSSSCG00000000368
ENSG00000123342
Matrix metallopeptidase 19
Tissue enhanced
Detected in many
liver:
39.5
ovary:
32.3
MMP23B
ENSSSCG00000003351
ENSG00000189409
Matrix metallopeptidase 23B
Tissue enhanced
Detected in many
cartilage:
53.6
MMP9
ENSSSCG00000007436
ENSG00000100985
Matrix metalloproteinase-9 precursor
Tissue enriched
Detected in many
dura mater:
85.1
MOGAT1
ENSSSCG00000016225
ENSG00000124003
Monoacylglycerol O-acyltransferase 1
Tissue enhanced
Detected in many
liver:
46.2
small intestine:
16.4
MOXD1
ENSSSCG00000004191
ENSG00000079931
Monooxygenase DBH like 1
Tissue enhanced
Detected in many
cornea:
73.8
liver:
18.1
skin:
19.6
MRPS6
ENSSSCG00000026981
ENSG00000243927
Mitochondrial ribosomal protein S6
Tissue enhanced
Detected in all
lens:
62.4
male glands:
50.3
MSRA
ENSSSCG00000009684
ENSG00000175806
Methionine sulfoxide reductase A
Tissue enhanced
Detected in all
brain:
47.4
kidney:
39.7
liver:
46.1
MST1R
ENSSSCG00000027992
ENSG00000164078
Macrophage stimulating 1 receptor
Tissue enhanced
Detected in many
skin:
31.4
stomach:
32.8
MX1
ENSSSCG00000012077
ENSG00000157601
Interferon-induced GTP-binding protein Mx1
Low tissue specificity
Detected in all
MXRA8
ENSSSCG00000021880
ENSG00000162576
Matrix remodeling associated 8
Low tissue specificity
Detected in all
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