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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Biological process
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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1362 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000039854
ENSG00000152078
Tissue enriched
Detected in many
ovary:
138.1
na
ENSSSCG00000039895
Tissue enhanced
Detected in many
kidney:
116.2
na
ENSSSCG00000039915
ENSG00000104679
Low tissue specificity
Detected in all
na
ENSSSCG00000040146
ENSG00000188086
Low tissue specificity
Detected in all
na
ENSSSCG00000040438
ENSG00000131174
Low tissue specificity
Detected in all
na
ENSSSCG00000040461
ENSG00000129757
Low tissue specificity
Detected in many
na
ENSSSCG00000040484
Group enriched
Detected in some
cartilage:
24.2
liver:
28.7
na
ENSSSCG00000040535
ENSG00000160932
Tissue enhanced
Detected in many
lymphoid tissue:
57.0
na
ENSSSCG00000040554
ENSG00000092758
Tissue enriched
Detected in some
cartilage:
366.1
na
ENSSSCG00000040755
Tissue enhanced
Detected in many
cervix:
30.0
na
ENSSSCG00000040831
Tissue enhanced
Detected in many
liver:
141.4
na
ENSSSCG00000040956
Low tissue specificity
Detected in many
NAALAD2
ENSSSCG00000014933
ENSG00000077616
N-acetylated alpha-linked acidic dipeptidase 2
Low tissue specificity
Detected in all
NAB2
ENSSSCG00000000411
ENSG00000166886
NGFI-A binding protein 2
Low tissue specificity
Detected in many
NAMPT
ENSSSCG00000015435
ENSG00000105835
Nicotinamide phosphoribosyltransferase
Tissue enriched
Detected in all
lens:
169.3
NANOS1
ENSSSCG00000040025
ENSG00000188613
Nanos C2HC-type zinc finger 1
Tissue enhanced
Detected in many
male glands:
21.9
synovial tissue:
16.4
NAV2
ENSSSCG00000013351
ENSG00000166833
Neuron navigator 2
Low tissue specificity
Detected in all
NDN
ENSSSCG00000004834
ENSG00000182636
Necdin
Tissue enhanced
Detected in all
brain:
40.5
NDUFA4L2
ENSSSCG00000027621
ENSG00000185633
NADH dehydrogenase
Tissue enriched
Detected in many
cartilage:
82.0
NES
ENSSSCG00000006474
ENSG00000132688
Nestin
Group enriched
Detected in many
heart:
67.3
vagus nerve:
30.4
NET1
ENSSSCG00000023105
ENSG00000173848
Neuroepithelial cell transforming 1
Low tissue specificity
Detected in all
NETO2
ENSSSCG00000026318
ENSG00000171208
Neuropilin and tolloid like 2
Group enriched
Detected in many
brain:
27.2
cartilage:
76.4
NEURL1B
ENSSSCG00000016992
ENSG00000214357
Neuralized E3 ubiquitin protein ligase 1B
Low tissue specificity
Detected in many
NFATC1
ENSSSCG00000004856
ENSG00000131196
Nuclear factor of activated T-cells, cytoplasmic 1
Tissue enhanced
Detected in many
cartilage:
112.0
NFATC2
ENSSSCG00000007477
ENSG00000101096
Nuclear factor of activated T-cells, cytoplasmic 2
Tissue enhanced
Detected in many
cartilage:
117.5
NFIL3
ENSSSCG00000009592
ENSG00000165030
Nuclear factor, interleukin 3 regulated
Low tissue specificity
Detected in many
NGFR
ENSSSCG00000017548
ENSG00000064300
Nerve growth factor receptor
Tissue enhanced
Detected in many
vagus nerve:
28.9
NHSL2
ENSSSCG00000012408
ENSG00000204131
NHS like 2
Low tissue specificity
Detected in many
NIM1K
ENSSSCG00000016873
ENSG00000177453
NIM1 serine/threonine protein kinase
Low tissue specificity
Detected in many
NIPAL2
ENSSSCG00000031267
ENSG00000104361
NIPA like domain containing 2
Low tissue specificity
Detected in all
NKAIN3
ENSSSCG00000034894
ENSG00000185942
Sodium/potassium transporting ATPase interacting 3
Tissue enhanced
Detected in all
brain:
28.0
NKD2
ENSSSCG00000037791
ENSG00000145506
Naked cuticle homolog 2
Tissue enhanced
Detected in many
brain:
44.8
NKX3-2
ENSSSCG00000034181
ENSG00000109705
NK3 homeobox 2
Tissue enhanced
Detected in many
cartilage:
34.0
smooth muscle:
20.8
NLRC5
ENSSSCG00000039751
ENSG00000140853
Protein NLRC5
Tissue enhanced
Detected in many
lymphoid tissue:
34.2
stomach:
48.2
NOS2
ENSSSCG00000017755
ENSG00000007171
Nitric oxide synthase, inducible
Tissue enhanced
Detected in many
cartilage:
34.7
large intestine:
42.1
NOS3
ENSSSCG00000016450
ENSG00000164867
Nitric oxide synthase, endothelial
Tissue enhanced
Detected in many
penis:
48.6
NOSTRIN
ENSSSCG00000015923
ENSG00000163072
Nitric oxide synthase trafficking
Low tissue specificity
Detected in many
NOTCH1
ENSSSCG00000038509
ENSG00000148400
Notch 1
Low tissue specificity
Detected in all
NOTCH3
ENSSSCG00000025176
ENSG00000074181
Notch 3
Low tissue specificity
Detected in all
NOTCH4
ENSSSCG00000001440
ENSG00000204301
Neurogenic locus notch homolog protein 4 precursor
Low tissue specificity
Detected in many
NOVA2
ENSSSCG00000035029
ENSG00000104967
NOVA alternative splicing regulator 2
Tissue enhanced
Detected in many
brain:
25.8
NOX4
ENSSSCG00000014927
ENSG00000086991
NADPH oxidase 4
Tissue enhanced
Detected in many
kidney:
56.0
lens:
24.9
NOX5
ENSSSCG00000004966
ENSG00000255346
NADPH oxidase 5
Tissue enhanced
Detected in many
mesothelial tissue:
18.5
urinary bladder:
24.4
NPAS3
ENSSSCG00000001964
ENSG00000151322
Neuronal PAS domain protein 3
Tissue enhanced
Detected in many
brain:
18.5
cartilage:
25.9
NPR1
ENSSSCG00000006572
ENSG00000169418
Natriuretic peptide receptor 1
Tissue enhanced
Detected in many
adipose tissue:
45.7
aorta:
28.4
mesothelial tissue:
26.9
NPR3
ENSSSCG00000036201
ENSG00000113389
Natriuretic peptide receptor 3
Tissue enhanced
Detected in many
choroid plexus:
21.9
cornea:
33.2
lens:
39.8
NPTX1
ENSSSCG00000017144
ENSG00000171246
Neuronal pentraxin 1
Tissue enhanced
Detected in many
brain:
48.5
testis:
17.2
NPY1R
ENSSSCG00000008888
ENSG00000164128
Neuropeptide Y receptor type 1
Tissue enhanced
Detected in all
choroid plexus:
27.1
ovary:
53.5
NR2F2
ENSSSCG00000002254
ENSG00000185551
COUP transcription factor 2 isoform 2
Low tissue specificity
Detected in all
NR3C2
ENSSSCG00000037766
ENSG00000151623
Nuclear receptor subfamily 3 group C member 2
Low tissue specificity
Detected in all
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