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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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765 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FAM46A
ENSSSCG00000004464
ENSG00000112773
Family with sequence similarity 46 member A
Low tissue specificity
Detected in all
FANCD2
ENSSSCG00000011563
ENSG00000144554
Fanconi anemia complementation group D2
Tissue enhanced
Detected in many
testis:
37.0
FAT4
ENSSSCG00000036155
ENSG00000196159
FAT atypical cadherin 4
Low tissue specificity
Detected in many
FCER2
ENSSSCG00000040377
ENSG00000104921
Low affinity immunoglobulin epsilon Fc receptor
Tissue enriched
Detected in some
lymphoid tissue:
47.0
FCN2
ENSSSCG00000023333
Ficolin-2 precursor
Tissue enhanced
Detected in many
adipose tissue:
64.7
large intestine:
57.6
small intestine:
75.4
stomach:
99.9
vagus nerve:
43.5
FCRL3
ENSSSCG00000006457
ENSG00000160856
Fc receptor like 3
Tissue enriched
Detected in many
lymphoid tissue:
38.2
FCRLA
ENSSSCG00000030246
ENSG00000132185
Fc receptor like A
Tissue enhanced
Detected in some
lymphoid tissue:
34.8
small intestine:
12.0
upper respiratory system:
19.8
FERMT3
ENSSSCG00000013041
ENSG00000149781
Fermitin family member 3
Tissue enhanced
Detected in all
lymphoid tissue:
54.0
FEZF1
ENSSSCG00000031221
ENSG00000128610
FEZ family zinc finger 1
Tissue enhanced
Detected in some
brain:
10.4
pituitary gland:
3.4
upper respiratory system:
15.2
FGL2
ENSSSCG00000015413
ENSG00000127951
Fibroleukin precursor
Tissue enhanced
Detected in all
synovial tissue:
62.2
FHL2
ENSSSCG00000008147
ENSG00000115641
Four and a half LIM domains 2
Tissue enhanced
Detected in many
heart:
123.6
FIBIN
ENSSSCG00000022592
ENSG00000176971
Fin bud initiation factor homolog (zebrafish)
Tissue enhanced
Detected in many
cartilage:
83.3
dura mater:
39.3
FLNC
ENSSSCG00000016578
ENSG00000128591
Filamin C
Tissue enhanced
Detected in many
heart:
70.9
skeletal muscle:
158.2
smooth muscle:
105.3
FMOD
ENSSSCG00000015270
ENSG00000122176
Fibromodulin
Tissue enriched
Detected in many
cartilage:
254.1
FN1
ENSSSCG00000016174
ENSG00000115414
Fibronectin 1
Tissue enhanced
Detected in many
adipose tissue:
168.3
male glands:
433.9
synovial tissue:
420.5
FNDC1
ENSSSCG00000004052
ENSG00000164694
Fibronectin type III domain containing 1
Tissue enhanced
Detected in many
dura mater:
58.1
mesothelial tissue:
57.0
synovial tissue:
45.8
FOXA2
ENSSSCG00000007114
ENSG00000125798
Forkhead box A2
Tissue enhanced
Detected in many
cartilage:
20.4
liver:
22.2
male glands:
33.3
stomach:
37.4
FOXG1
ENSSSCG00000033761
ENSG00000176165
Forkhead box G1
Group enriched
Detected in some
brain:
43.5
testis:
17.4
upper respiratory system:
10.9
FREM1
ENSSSCG00000039025
ENSG00000164946
FRAS1 related extracellular matrix 1
Tissue enhanced
Detected in many
choroid plexus:
30.0
kidney:
39.0
FRMD1
ENSSSCG00000004017
ENSG00000153303
FERM domain containing 1
Group enriched
Detected in many
gallbladder:
17.9
kidney:
49.5
testis:
53.6
FRZB
ENSSSCG00000016018
ENSG00000162998
Secreted frizzled-related protein 3 precursor
Tissue enhanced
Detected in many
heart:
72.7
pineal gland:
62.3
FSCN1
ENSSSCG00000007586
ENSG00000075618
Fascin
Tissue enhanced
Detected in many
brain:
55.1
FSTL4
ENSSSCG00000014293
ENSG00000053108
Follistatin like 4
Tissue enhanced
Detected in many
adrenal gland:
36.7
brain:
13.5
FXYD2
ENSSSCG00000015084
ENSG00000137731
Sodium/potassium-transporting ATPase subunit gamma
Tissue enriched
Detected in some
kidney:
108.6
GAL
ENSSSCG00000012883
ENSG00000069482
Galanin peptides preproprotein
Tissue enriched
Detected in some
adrenal gland:
101.7
GALNT6
ENSSSCG00000026890
ENSG00000139629
Polypeptide N-acetylgalactosaminyltransferase 6
Tissue enhanced
Detected in many
esophagus:
50.7
male glands:
89.3
salivary gland:
53.5
GARNL3
ENSSSCG00000005609
ENSG00000136895
GTPase activating Rap/RanGAP domain like 3
Tissue enhanced
Detected in many
brain:
20.6
liver:
30.3
salivary gland:
21.8
GATA2
ENSSSCG00000011618
ENSG00000179348
Endothelial transcription factor GATA-2
Tissue enriched
Detected in many
male glands:
214.6
GATA5
ENSSSCG00000007538
ENSG00000130700
GATA binding protein 5
Tissue enhanced
Detected in many
adipose tissue:
32.2
mesothelial tissue:
60.4
small intestine:
29.7
stomach:
45.3
GCNT3
ENSSSCG00000004584
ENSG00000140297
Glucosaminyl (N-acetyl) transferase 3, mucin type
Group enriched
Detected in many
large intestine:
19.1
small intestine:
52.3
stomach:
44.3
upper respiratory system:
30.6
GDF10
ENSSSCG00000010376
ENSG00000266524
Growth differentiation factor 10
Tissue enhanced
Detected in many
cartilage:
40.2
dura mater:
14.4
synovial tissue:
32.4
GDF7
ENSSSCG00000028931
ENSG00000143869
Growth differentiation factor 7
Tissue enhanced
Detected in some
cervix:
34.2
ductus deferens:
10.1
male glands:
25.3
upper respiratory system:
10.6
GEM
ENSSSCG00000006105
ENSG00000164949
GTP binding protein overexpressed in skeletal muscle
Tissue enhanced
Detected in many
cartilage:
62.6
GFRA1
ENSSSCG00000010655
ENSG00000151892
GDNF family receptor alpha 1
Low tissue specificity
Detected in many
GJB1
ENSSSCG00000012394
ENSG00000169562
Gap junction protein beta 1
Tissue enhanced
Detected in many
epididymis:
101.6
liver:
97.0
male glands:
100.9
GJB5
ENSSSCG00000003585
ENSG00000189280
Gap junction protein beta 5
Group enriched
Detected in some
cornea:
33.3
mouth:
14.1
skin:
11.4
upper respiratory system:
10.2
GLP2R
ENSSSCG00000017998
ENSG00000065325
Glucagon-like peptide 2 receptor
Tissue enhanced
Detected in many
gallbladder:
27.6
urinary bladder:
21.1
GMFG
ENSSSCG00000040981
ENSG00000130755
Glia maturation factor gamma
Tissue enhanced
Detected in many
lymphoid tissue:
75.4
GMIP
ENSSSCG00000013931
ENSG00000089639
GEM interacting protein
Tissue enhanced
Detected in many
lymphoid tissue:
28.2
stomach:
33.9
GMNC
ENSSSCG00000024420
ENSG00000205835
Geminin coiled-coil domain containing
Tissue enhanced
Detected in many
choroid plexus:
27.0
GP91-PHOX
ENSSSCG00000012229
ENSG00000165168
Cytochrome b-245 heavy chain precursor
Tissue enhanced
Detected in many
lung:
31.0
lymphoid tissue:
49.0
synovial tissue:
37.3
GPM6A
ENSSSCG00000023328
ENSG00000150625
Glycoprotein M6A
Tissue enhanced
Detected in some
brain:
77.2
choroid plexus:
23.5
pineal gland:
19.0
GPRC5A
ENSSSCG00000029592
ENSG00000013588
G protein-coupled receptor class C group 5 member A
Tissue enhanced
Detected in many
cartilage:
35.0
large intestine:
51.4
lung:
52.1
synovial tissue:
47.7
GPRIN3
ENSSSCG00000039821
ENSG00000185477
GPRIN family member 3
Tissue enhanced
Detected in many
brain:
34.2
lymphoid tissue:
35.7
pineal gland:
34.6
GREB1L
ENSSSCG00000003699
ENSG00000141449
Growth regulation by estrogen in breast cancer 1 like
Tissue enhanced
Detected in many
ductus deferens:
37.3
epididymis:
62.0
GREM1
ENSSSCG00000033657
ENSG00000166923
Gremlin 1, DAN family BMP antagonist
Tissue enhanced
Detected in many
cartilage:
38.7
gallbladder:
38.9
kidney:
37.6
small intestine:
50.0
smooth muscle:
39.8
GRHL1
ENSSSCG00000026068
ENSG00000134317
Grainyhead like transcription factor 1
Tissue enhanced
Detected in many
mouth:
24.3
salivary gland:
28.2
skin:
42.7
GRIN1
ENSSSCG00000039834
ENSG00000176884
Glutamate ionotropic receptor NMDA type subunit 1
Group enriched
Detected in some
brain:
48.8
male glands:
23.9
GRIP1
ENSSSCG00000000478
ENSG00000155974
Glutamate receptor interacting protein 1
Low tissue specificity
Detected in many
GSC
ENSSSCG00000002490
ENSG00000133937
Goosecoid homeobox
Tissue enhanced
Detected in some
adipose tissue:
13.4
aorta:
8.0
mesothelial tissue:
14.0
mouth:
8.2
upper respiratory system:
14.1
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