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Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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765 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CHDH
ENSSSCG00000011456
ENSG00000016391
Choline dehydrogenase
Tissue enhanced
Detected in many
liver:
44.2
CHIA
ENSSSCG00000023706
ENSG00000134216
Acidic mammalian chitinase precursor
Tissue enriched
Detected in many
breast:
82.1
CHRM3
ENSSSCG00000026176
ENSG00000133019
Muscarinic acetylcholine receptor M3
Tissue enhanced
Detected in many
salivary gland:
36.8
smooth muscle:
32.6
CHST1
ENSSSCG00000013273
ENSG00000175264
Carbohydrate sulfotransferase 1
Tissue enhanced
Detected in many
brain:
37.4
cornea:
15.8
CHST2
ENSSSCG00000022031
ENSG00000175040
Carbohydrate sulfotransferase 2
Tissue enhanced
Detected in many
brain:
34.6
thyroid gland:
23.3
CIDEA
ENSSSCG00000024644
ENSG00000176194
Cell death activator CIDE-A
Tissue enhanced
Detected in many
adipose tissue:
75.3
aorta:
37.8
bone marrow:
43.0
cornea:
28.4
CILP2
ENSSSCG00000013934
ENSG00000160161
Cartilage intermediate layer protein 2
Tissue enriched
Detected in some
cartilage:
152.8
CITED4
ENSSSCG00000033952
ENSG00000179862
Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4
Tissue enhanced
Detected in many
male glands:
43.1
salivary gland:
72.2
upper respiratory system:
46.4
CKAP2
ENSSSCG00000009378
ENSG00000136108
Cytoskeleton associated protein 2
Tissue enhanced
Detected in many
lymphoid tissue:
32.9
CLDN11
ENSSSCG00000011747
ENSG00000013297,ENSG00000285218
Claudin-11
Tissue enriched
Detected in some
brain:
149.9
CLEC3A
ENSSSCG00000034604
ENSG00000166509
C-type lectin domain family 3 member A
Tissue enriched
Detected in some
cartilage:
199.8
CLIC6
ENSSSCG00000028112
ENSG00000159212
Chloride intracellular channel 6
Tissue enriched
Detected in some
choroid plexus:
192.2
CLMP
ENSSSCG00000022961
ENSG00000166250
CXADR like membrane protein
Tissue enhanced
Detected in all
cervix:
64.3
CLU
ENSSSCG00000009668
ENSG00000120885
Clusterin Clusterin beta chain Clusterin alpha chain
Tissue enhanced
Detected in all
cartilage:
638.2
CMAH
ENSSSCG00000001099
Cytidine monophosphate-N-acetylneuraminic acid hydroxylase
Tissue enhanced
Detected in many
esophagus:
62.7
salivary gland:
55.2
upper respiratory system:
109.7
CNN1
ENSSSCG00000013614
ENSG00000130176
Calponin-1
Tissue enhanced
Detected in many
smooth muscle:
549.0
urinary bladder:
230.6
CNR2
ENSSSCG00000027849
ENSG00000188822
Cannabinoid receptor 2
Tissue enriched
Detected in some
lymphoid tissue:
39.5
CNTFR
ENSSSCG00000010974
ENSG00000122756
Ciliary neurotrophic factor receptor
Tissue enhanced
Detected in many
urinary bladder:
60.4
COL11A1
ENSSSCG00000006857
ENSG00000060718
Collagen type XI alpha 1 chain
Tissue enriched
Detected in many
cartilage:
170.9
COL11A2
ENSSSCG00000001473
ENSG00000204248
Collagen type XI alpha 2 chain
Tissue enriched
Detected in some
cartilage:
294.3
COL12A1
ENSSSCG00000004484
ENSG00000111799
Collagen type XII alpha 1 chain
Tissue enhanced
Detected in many
cartilage:
157.9
COL1A1
ENSSSCG00000036135
ENSG00000108821
Collagen type I alpha 1 chain
Tissue enhanced
Detected in many
dura mater:
410.3
COL1A2
ENSSSCG00000015326
ENSG00000164692
Collagen alpha-2(I) chain precursor
Tissue enhanced
Detected in many
dura mater:
322.8
COL2A1
ENSSSCG00000025523
ENSG00000139219
Collagen type II alpha 1 chain
Tissue enriched
Detected in some
cartilage:
1246.4
COL6A2
ENSSSCG00000028022
ENSG00000142173
Collagen type VI alpha 2 chain
Tissue enhanced
Detected in all
cartilage:
281.6
synovial tissue:
155.1
COL6A5
ENSSSCG00000011186
ENSG00000172752
Collagen type VI alpha 5 chain
Tissue enhanced
Detected in many
gallbladder:
17.5
large intestine:
23.0
small intestine:
15.1
stomach:
30.0
COL8A1
ENSSSCG00000011973
ENSG00000144810
Collagen type VIII alpha 1 chain
Tissue enhanced
Detected in many
cartilage:
78.5
cornea:
48.6
dura mater:
40.6
COL8A2
ENSSSCG00000033641
ENSG00000171812
Collagen type VIII alpha 2 chain
Tissue enhanced
Detected in many
cornea:
73.0
dura mater:
18.9
COLGALT2
ENSSSCG00000030217
ENSG00000198756
Collagen beta(1-O)galactosyltransferase 2
Tissue enhanced
Detected in many
cartilage:
67.3
cornea:
37.8
COMP
ENSSSCG00000013916
ENSG00000105664
Cartilage oligomeric matrix protein
Tissue enriched
Detected in some
cartilage:
691.8
CORO1A
ENSSSCG00000038055
ENSG00000102879
Coronin 1A
Tissue enhanced
Detected in many
lymphoid tissue:
109.8
upper respiratory system:
54.6
COTL1
ENSSSCG00000037645
ENSG00000103187
Coactosin like F-actin binding protein 1
Tissue enriched
Detected in many
lens:
185.6
CPSF4L
ENSSSCG00000040611
ENSG00000187959
Cleavage and polyadenylation specific factor 4 like
Tissue enhanced
Detected in many
male glands:
23.9
retina:
20.1
salivary gland:
18.8
CPZ
ENSSSCG00000032151
ENSG00000109625
Carboxypeptidase Z
Tissue enhanced
Detected in many
cartilage:
27.7
skin:
25.7
CR2
ENSSSCG00000028674
ENSG00000117322
Complement C3d receptor 2
Group enriched
Detected in some
lymphoid tissue:
90.2
small intestine:
27.8
synovial tissue:
93.4
upper respiratory system:
29.5
CRABP1
ENSSSCG00000021873
ENSG00000166426
Cellular retinoic acid-binding protein 1
Tissue enriched
Detected in many
pineal gland:
321.9
CRABP2
ENSSSCG00000006472
ENSG00000143320
Cellular retinoic acid-binding protein 2
Tissue enhanced
Detected in many
brain:
53.9
cartilage:
35.4
mouth:
67.3
CRACR2A
ENSSSCG00000000732
ENSG00000130038
Calcium release activated channel regulator 2A
Tissue enhanced
Detected in many
esophagus:
24.5
large intestine:
26.3
male glands:
37.7
salivary gland:
48.2
stomach:
23.2
CRISP3
ENSSSCG00000024347
ENSG00000096006
Cysteine rich secretory protein 3
Group enriched
Detected in some
male glands:
265.0
upper respiratory system:
115.5
CRTAC1
ENSSSCG00000010530
ENSG00000095713
Cartilage acidic protein 1
Tissue enriched
Detected in some
cornea:
236.9
CRYAB
ENSSSCG00000036724
ENSG00000109846
Alpha-crystallin B chain
Tissue enriched
Detected in many
lens:
2223.0
CRYBA1
ENSSSCG00000040641
ENSG00000108255
Crystallin beta A1
Tissue enriched
Detected in single
lens:
2538.5
CRYBG2
ENSSSCG00000033539
ENSG00000176092
Crystallin beta-gamma domain containing 2
Tissue enhanced
Detected in many
skin:
52.3
CSN3
ENSSSCG00000009267
ENSG00000171209
Kappa-casein precursor
Tissue enriched
Detected in some
breast:
55.6
CSPG4
ENSSSCG00000001873
ENSG00000173546
Chondroitin sulfate proteoglycan 4
Tissue enhanced
Detected in many
cartilage:
77.1
penis:
30.9
CTNND2
ENSSSCG00000016780
ENSG00000169862
Catenin delta 2
Tissue enhanced
Detected in many
brain:
57.2
pineal gland:
25.0
CXCL14
ENSSSCG00000014310
ENSG00000145824
C-X-C motif chemokine 14 precursor
Tissue enhanced
Detected in many
skin:
100.3
stomach:
67.6
urinary bladder:
72.5
CXCR5
ENSSSCG00000015098
ENSG00000160683
C-X-C motif chemokine receptor 5
Tissue enhanced
Detected in many
lymphoid tissue:
36.0
CYFIP2
ENSSSCG00000017054
ENSG00000055163
Cytoplasmic FMR1 interacting protein 2
Tissue enhanced
Detected in many
brain:
48.7
lymphoid tissue:
43.3
CYP21A2
ENSSSCG00000001428
ENSG00000231852
Steroid 21-hydroxylase
Tissue enriched
Detected in many
adrenal gland:
367.3
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