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Human disease related genes
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Biological process
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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117 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
A4GNT
ENSSSCG00000022473
ENSG00000118017
Alpha-1,4-N-acetylglucosaminyltransferase
Group enriched
Detected in some
small intestine:
94.3
stomach:
58.4
ACE
ENSSSCG00000017296
ENSG00000159640
Angiotensin-converting enzyme isoform 1 precursor
Tissue enhanced
Detected in many
testis:
102.1
ADGRL3
ENSSSCG00000026129
ENSG00000150471
Adhesion G protein-coupled receptor L3
Tissue enhanced
Detected in many
brain:
28.5
pineal gland:
20.4
AGR2
ENSSSCG00000015363
ENSG00000106541
Anterior gradient protein 2 homolog precursor
Tissue enriched
Detected in many
male glands:
443.2
ANXA10
ENSSSCG00000030058
ENSG00000109511
Annexin A10
Tissue enriched
Detected in some
stomach:
84.3
AQP5
ENSSSCG00000000211
ENSG00000161798
Aquaporin-5
Tissue enhanced
Detected in many
cornea:
35.3
male glands:
97.9
salivary gland:
42.2
upper respiratory system:
40.6
ATP6
ENSSSCG00000018081
ENSG00000198899
ATP synthase subunit a
Tissue enhanced
Detected in all
heart:
1899.7
ATP8
ENSSSCG00000018080
ENSG00000228253
ATP synthase protein 8
Tissue enhanced
Detected in all
heart:
1761.6
C17orf50
ENSSSCG00000033580
ENSG00000270806
Chromosome 17 open reading frame 50
Low tissue specificity
Detected in many
CA8
ENSSSCG00000006233
ENSG00000178538
Carbonic anhydrase 8
Tissue enhanced
Detected in many
brain:
39.4
male glands:
79.3
CAPN6
ENSSSCG00000012584
ENSG00000077274
Calpain 6
Tissue enriched
Detected in many
cartilage:
177.0
CCKAR
ENSSSCG00000023501
ENSG00000163394
Cholecystokinin A receptor
Tissue enhanced
Detected in all
gallbladder:
30.0
small intestine:
18.8
CDA
ENSSSCG00000021259
ENSG00000158825
Cytidine deaminase
Tissue enhanced
Detected in many
cartilage:
51.0
male glands:
51.9
CDKL2
ENSSSCG00000008970
ENSG00000138769
Cyclin dependent kinase like 2
Tissue enhanced
Detected in many
testis:
32.4
thyroid gland:
19.5
CDO1
ENSSSCG00000014219
ENSG00000129596
Cysteine dioxygenase type 1
Group enriched
Detected in many
lens:
88.3
liver:
54.7
male glands:
203.4
CGREF1
ENSSSCG00000008555
ENSG00000138028
Cell growth regulator with EF-hand domain 1
Tissue enhanced
Detected in many
esophagus:
36.8
male glands:
137.1
salivary gland:
40.7
CLDN18
ENSSSCG00000011657
ENSG00000066405
Claudin-18 precursor
Tissue enriched
Detected in some
stomach:
139.2
CLDN2
ENSSSCG00000037234
ENSG00000165376
Claudin-2
Tissue enhanced
Detected in some
choroid plexus:
53.5
gallbladder:
48.1
kidney:
57.6
small intestine:
42.2
stomach:
32.9
CLTRN
ENSSSCG00000035893
ENSG00000147003
Collectrin, amino acid transport regulator
Group enriched
Detected in many
choroid plexus:
29.1
kidney:
57.5
COL7A1
ENSSSCG00000011355
ENSG00000114270
Collagen type VII alpha 1 chain
Tissue enhanced
Detected in many
skin:
55.8
COX1
ENSSSCG00000018075
ENSG00000198804
Cytochrome c oxidase subunit 1
Tissue enhanced
Detected in all
heart:
2782.5
COX2
ENSSSCG00000018078
ENSG00000198712
Cytochrome c oxidase subunit II (mitochondrion)
Tissue enhanced
Detected in all
heart:
2180.4
CPD
ENSSSCG00000017799
ENSG00000108582
Carboxypeptidase D
Tissue enhanced
Detected in all
male glands:
86.0
CREG1
ENSSSCG00000006308
ENSG00000143162
Cellular repressor of E1A stimulated genes 1
Tissue enhanced
Detected in all
male glands:
80.5
testis:
86.7
CT83
ENSSSCG00000021942
ENSG00000204019
Cancer/testis antigen 83
Tissue enhanced
Detected in many
esophagus:
20.4
large intestine:
15.4
salivary gland:
19.7
testis:
12.8
upper respiratory system:
19.4
CUX2
ENSSSCG00000009831
ENSG00000111249
Cut like homeobox 2
Tissue enhanced
Detected in many
adrenal gland:
30.8
brain:
22.8
choroid plexus:
37.1
liver:
32.3
EGF
ENSSSCG00000009134
ENSG00000138798
Pro-epidermal growth factor precursor
Tissue enhanced
Detected in many
choroid plexus:
46.4
kidney:
90.0
male glands:
52.2
salivary gland:
32.6
ENOX1
ENSSSCG00000021818
ENSG00000120658
Ecto-NOX disulfide-thiol exchanger 1
Tissue enhanced
Detected in many
cornea:
37.1
FAIM2
ENSSSCG00000000206
ENSG00000135472
Fas apoptotic inhibitory molecule 2
Tissue enhanced
Detected in many
brain:
65.4
pineal gland:
35.4
retina:
35.6
FAM107A
ENSSSCG00000033189
ENSG00000168309
Protein FAM107A
Tissue enhanced
Detected in all
choroid plexus:
97.7
FAM177B
ENSSSCG00000010837
ENSG00000197520
Family with sequence similarity 177 member B
Tissue enhanced
Detected in many
esophagus:
29.1
male glands:
76.7
FAM213A
ENSSSCG00000010340
ENSG00000122378
Redox-regulatory protein FAM213A isoform 2
Low tissue specificity
Detected in all
FAM3D
ENSSSCG00000025529
ENSG00000198643
Family with sequence similarity 3 member D
Tissue enhanced
Detected in some
epididymis:
46.8
large intestine:
56.0
small intestine:
29.8
stomach:
39.6
FLYWCH2
ENSSSCG00000022630
ENSG00000162076
FLYWCH family member 2
Tissue enhanced
Detected in many
lens:
30.9
GALNT12
ENSSSCG00000005379
ENSG00000119514
Polypeptide N-acetylgalactosaminyltransferase 12
Tissue enhanced
Detected in many
male glands:
101.5
stomach:
29.1
GALNT5
ENSSSCG00000026146
ENSG00000136542
Polypeptide N-acetylgalactosaminyltransferase 5
Tissue enhanced
Detected in many
esophagus:
19.6
salivary gland:
22.7
GALNT6
ENSSSCG00000026890
ENSG00000139629
Polypeptide N-acetylgalactosaminyltransferase 6
Tissue enhanced
Detected in many
esophagus:
50.7
male glands:
89.3
salivary gland:
53.5
GALNT7
ENSSSCG00000009705
ENSG00000109586
Polypeptide N-acetylgalactosaminyltransferase 7
Tissue enhanced
Detected in many
small intestine:
42.5
stomach:
42.4
GAMT
ENSSSCG00000023142
ENSG00000130005
Guanidinoacetate N-methyltransferase
Tissue enriched
Detected in many
liver:
108.3
GCNT3
ENSSSCG00000004584
ENSG00000140297
Glucosaminyl (N-acetyl) transferase 3, mucin type
Group enriched
Detected in many
large intestine:
19.1
small intestine:
52.3
stomach:
44.3
upper respiratory system:
30.6
GFPT1
ENSSSCG00000008339
ENSG00000198380
Glutamine--fructose-6-phosphate aminotransferase
Tissue enriched
Detected in all
male glands:
198.6
GIF
ENSSSCG00000013117
ENSG00000134812
Gastric intrinsic factor
Tissue enhanced
Detected in all
small intestine:
65.4
stomach:
26.7
GJB3
ENSSSCG00000038677
ENSG00000188910
Gap junction protein beta 3
Tissue enhanced
Detected in many
cornea:
19.2
male glands:
29.8
upper respiratory system:
19.2
GKN3
ENSSSCG00000037028
Gastrokine-3 precursor
Tissue enriched
Detected in some
small intestine:
705.8
GLP1R
ENSSSCG00000001589
ENSG00000112164
Glucagon-like peptide 1 receptor precursor
Tissue enriched
Detected in many
small intestine:
35.0
GOLM1
ENSSSCG00000010955
ENSG00000135052
Golgi membrane protein 1
Tissue enhanced
Detected in all
small intestine:
76.5
stomach:
88.5
HABP2
ENSSSCG00000010639
ENSG00000148702
Hyaluronan-binding protein 2
Tissue enriched
Detected in some
liver:
108.9
HOMER2
ENSSSCG00000001804
ENSG00000103942
Homer scaffolding protein 2
Tissue enhanced
Detected in many
salivary gland:
47.6
HOXB3
ENSSSCG00000017534
ENSG00000120093
Homeobox B3
Tissue enhanced
Detected in many
male glands:
64.2
HOXB4
ENSSSCG00000017535
ENSG00000182742
Homeobox B4
Tissue enhanced
Detected in many
epididymis:
47.8
male glands:
83.5
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