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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
DICTIONARY
THE PROJECT
INTRODUCTION
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TECHNICAL DATA
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916 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TBX3
ENSSSCG00000009865
ENSG00000135111
T-box 3
Tissue enhanced
Detected in many
adrenal gland:
41.2
male glands:
87.6
thyroid gland:
38.6
TCEA3
ENSSSCG00000032674
ENSG00000204219
Transcription elongation factor A3
Tissue enhanced
Detected in many
male glands:
79.9
skeletal muscle:
56.6
TFEC
ENSSSCG00000038138
ENSG00000105967
Transcription factor EC
Tissue enhanced
Detected in many
kidney:
29.7
lymphoid tissue:
40.3
TFPI2
ENSSSCG00000015322
ENSG00000105825
Tissue factor pathway inhibitor 2
Tissue enhanced
Detected in many
adipose tissue:
67.0
ovary:
75.3
TGFBI
ENSSSCG00000014316
ENSG00000120708
Transforming growth factor beta induced
Tissue enhanced
Detected in many
cartilage:
147.5
cornea:
213.4
TGM2
ENSSSCG00000023522
ENSG00000198959
Transglutaminase 2
Low tissue specificity
Detected in many
THBD
ENSSSCG00000007115
ENSG00000178726
Thrombomodulin precursor
Tissue enhanced
Detected in many
mesothelial tissue:
74.0
TIMP3
ENSSSCG00000031866
ENSG00000100234
TIMP metallopeptidase inhibitor 3
Low tissue specificity
Detected in all
TINAG
ENSSSCG00000001484
ENSG00000137251
Tubulointerstitial nephritis antigen
Tissue enriched
Detected in many
kidney:
119.3
TINAGL1
ENSSSCG00000003600
ENSG00000142910
Tubulointerstitial nephritis antigen like 1
Low tissue specificity
Detected in many
TKFC
ENSSSCG00000013087
ENSG00000149476
Triokinase and FMN cyclase
Tissue enhanced
Detected in all
kidney:
38.7
liver:
42.9
TLCD2
ENSSSCG00000040205
ENSG00000185561
TLC domain containing 2
Tissue enhanced
Detected in all
brain:
20.7
kidney:
19.1
TLDC2
ENSSSCG00000031690
ENSG00000101342
TBC/LysM-associated domain containing 2
Tissue enhanced
Detected in many
large intestine:
19.1
small intestine:
28.5
TLR4
ENSSSCG00000005503
ENSG00000136869
Toll-like receptor 4 isoform 1 precursor
Tissue enhanced
Detected in many
male glands:
40.1
TMC4
ENSSSCG00000003266
ENSG00000167608
Transmembrane channel like 4
Tissue enhanced
Detected in many
male glands:
35.2
TMEM108
ENSSSCG00000011635
ENSG00000144868
Transmembrane protein 108
Tissue enhanced
Detected in many
choroid plexus:
21.1
lens:
17.7
pineal gland:
20.2
retina:
26.8
TMEM117
ENSSSCG00000000801
ENSG00000139173
Transmembrane protein 117
Group enriched
Detected in many
brain:
38.1
lens:
64.5
TMEM174
ENSSSCG00000014067
ENSG00000164325
Transmembrane protein 174
Tissue enriched
Detected in some
kidney:
69.3
TMEM184B
ENSSSCG00000000108
ENSG00000198792
Transmembrane protein 184B
Low tissue specificity
Detected in all
TMEM200C
ENSSSCG00000039627
ENSG00000206432
Transmembrane protein 200C
Tissue enhanced
Detected in many
ductus deferens:
17.8
lens:
27.1
pineal gland:
22.1
TMEM252
ENSSSCG00000037125
ENSG00000181778
Transmembrane protein 252
Tissue enhanced
Detected in all
kidney:
27.6
TMEM47
ENSSSCG00000024132
ENSG00000147027
Transmembrane protein 47
Tissue enhanced
Detected in all
brain:
37.2
lens:
37.9
TMEM52B
ENSSSCG00000032431
ENSG00000165685
Transmembrane protein 52B
Group enriched
Detected in many
heart:
41.0
kidney:
48.6
retina:
19.4
TMEM54
ENSSSCG00000026455
ENSG00000121900
Transmembrane protein 54
Group enriched
Detected in many
large intestine:
74.6
stomach:
93.8
TMEM59L
ENSSSCG00000013911
ENSG00000105696
Transmembrane protein 59-like precursor
Group enriched
Detected in many
brain:
64.7
pineal gland:
64.0
pituitary gland:
19.5
retina:
21.7
TMIGD1
ENSSSCG00000017798
ENSG00000182271
Transmembrane and immunoglobulin domain containing 1
Group enriched
Detected in some
kidney:
70.7
large intestine:
55.4
small intestine:
103.3
TMX3
ENSSSCG00000004884
ENSG00000166479
Thioredoxin related transmembrane protein 3
Tissue enriched
Detected in all
lens:
60.1
TNC
ENSSSCG00000005494
ENSG00000041982
Tenascin precursor
Tissue enhanced
Detected in many
cartilage:
169.5
smooth muscle:
64.2
synovial tissue:
56.1
TNFRSF12A
ENSSSCG00000027130
ENSG00000006327
TNF receptor superfamily member 12A
Tissue enhanced
Detected in many
lens:
46.6
ovary:
89.9
TNFSF13B
ENSSSCG00000009542
ENSG00000102524
Tumor necrosis factor ligand superfamily member 13B
Tissue enhanced
Detected in many
lymphoid tissue:
16.1
small intestine:
37.3
stomach:
17.4
TOP1MT
ENSSSCG00000006958
ENSG00000184428
DNA topoisomerase I mitochondrial
Low tissue specificity
Detected in all
TP53I11
ENSSSCG00000031819
ENSG00000175274
Tumor protein p53 inducible protein 11
Low tissue specificity
Detected in many
TPCN1
ENSSSCG00000009879
ENSG00000186815
Two pore segment channel 1
Low tissue specificity
Detected in all
TRABD2B
ENSSSCG00000037318
ENSG00000269113
TraB domain containing 2B
Tissue enhanced
Detected in many
adipose tissue:
18.4
cartilage:
37.9
TRAF3IP1
ENSSSCG00000025228
ENSG00000204104
TRAF3 interacting protein 1
Low tissue specificity
Detected in all
TREH
ENSSSCG00000028204
ENSG00000118094
Trehalase
Group enriched
Detected in many
gallbladder:
26.4
kidney:
11.6
small intestine:
20.8
TRIM50
ENSSSCG00000007703
ENSG00000146755
E3 ubiquitin-protein ligase TRIM50
Tissue enhanced
Detected in some
brain:
4.0
kidney:
15.2
skin:
6.7
stomach:
8.7
TRPM5
ENSSSCG00000039644
ENSG00000070985
Transient receptor potential cation channel subfamily M member 5
Tissue enriched
Detected in some
kidney:
89.7
TRPM8
ENSSSCG00000016314
ENSG00000144481
Transient receptor potential cation channel subfamily M member 8
Group enriched
Detected in some
kidney:
14.6
liver:
28.1
TRPV5
ENSSSCG00000016469
ENSG00000127412
Transient receptor potential cation channel subfamily V member 5
Tissue enhanced
Detected in many
lymphoid tissue:
22.1
male glands:
35.6
TSKU
ENSSSCG00000014871
ENSG00000182704
Tsukushi, small leucine rich proteoglycan
Tissue enhanced
Detected in many
kidney:
62.7
lens:
49.8
ovary:
81.7
TTC39B
ENSSSCG00000005186
ENSG00000155158
Tetratricopeptide repeat domain 39B
Low tissue specificity
Detected in many
TTYH2
ENSSSCG00000017238
ENSG00000141540
Tweety family member 2
Tissue enhanced
Detected in all
brain:
98.3
TYR
ENSSSCG00000026409
ENSG00000077498
Tyrosinase precursor
Tissue enhanced
Detected in many
kidney:
31.6
testis:
9.3
TYROBP
ENSSSCG00000002919
ENSG00000011600
TYRO protein tyrosine kinase-binding protein
Tissue enhanced
Detected in many
lymphoid tissue:
70.7
synovial tissue:
61.1
UGT8
ENSSSCG00000031904
ENSG00000174607
2-hydroxyacylsphingosine 1-beta-galactosyltransferase
Group enriched
Detected in many
brain:
109.4
vagus nerve:
33.2
UNC13C
ENSSSCG00000004614
ENSG00000137766
Unc-13 homolog C
Tissue enriched
Detected in many
brain:
98.8
UPB1
ENSSSCG00000010060
ENSG00000100024
Beta-ureidopropionase 1
Group enriched
Detected in all
kidney:
78.6
liver:
120.3
UPP2
ENSSSCG00000021938
ENSG00000007001
Uridine phosphorylase 2
Tissue enhanced
Detected in some
kidney:
69.9
liver:
19.3
small intestine:
16.2
USH1C
ENSSSCG00000013377
ENSG00000006611
USH1 protein network component harmonin
Group enriched
Detected in some
gallbladder:
16.1
kidney:
16.8
large intestine:
36.4
small intestine:
28.2
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