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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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1362 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CHL1
ENSSSCG00000011524
ENSG00000134121
Cell adhesion molecule L1 like
Tissue enhanced
Detected in many
brain:
47.4
pineal gland:
36.4
vagus nerve:
36.8
CHP2
ENSSSCG00000034827
ENSG00000166869
Calcineurin like EF-hand protein 2
Tissue enhanced
Detected in all
large intestine:
42.1
small intestine:
34.1
CHPF
ENSSSCG00000021610
ENSG00000123989
Chondroitin polymerizing factor
Tissue enhanced
Detected in all
cartilage:
72.9
CHRM2
ENSSSCG00000032532
ENSG00000181072
Muscarinic acetylcholine receptor M2
Tissue enhanced
Detected in many
gallbladder:
38.1
heart:
22.9
smooth muscle:
24.7
CHRNB4
ENSSSCG00000001753
ENSG00000117971
Cholinergic receptor nicotinic beta 4 subunit
Tissue enhanced
Detected in some
cartilage:
23.5
lens:
33.0
CHST15
ENSSSCG00000029482
ENSG00000182022
Carbohydrate sulfotransferase 15
Tissue enhanced
Detected in many
cartilage:
47.5
lymphoid tissue:
44.7
CHST2
ENSSSCG00000022031
ENSG00000175040
Carbohydrate sulfotransferase 2
Tissue enhanced
Detected in many
brain:
34.6
thyroid gland:
23.3
CHSY1
ENSSSCG00000004825
ENSG00000131873
Chondroitin sulfate synthase 1
Low tissue specificity
Detected in all
CILP
ENSSSCG00000004928
ENSG00000138615
Cartilage intermediate layer protein
Tissue enriched
Detected in some
cartilage:
332.4
CILP2
ENSSSCG00000013934
ENSG00000160161
Cartilage intermediate layer protein 2
Tissue enriched
Detected in some
cartilage:
152.8
CKAP4
ENSSSCG00000000171
ENSG00000136026
Cytoskeleton-associated protein 4
Tissue enhanced
Detected in all
cartilage:
61.8
ovary:
56.8
CLDN6
ENSSSCG00000023743
ENSG00000184697
Claudin-6
Tissue enhanced
Detected in many
lens:
19.5
ovary:
8.7
CLDN9
ENSSSCG00000021536
ENSG00000213937
Claudin-9
Tissue enhanced
Detected in many
pituitary gland:
31.2
CLEC12A
ENSSSCG00000039287
ENSG00000172322
C-type lectin domain family 12 member A
Low tissue specificity
Detected in all
CLEC14A
ENSSSCG00000023760
ENSG00000176435
C-type lectin domain containing 14A
Low tissue specificity
Detected in many
CLEC1A
ENSSSCG00000000649
ENSG00000150048
C-type lectin domain family 1 member A
Low tissue specificity
Detected in many
CLEC3A
ENSSSCG00000034604
ENSG00000166509
C-type lectin domain family 3 member A
Tissue enriched
Detected in some
cartilage:
199.8
CLU
ENSSSCG00000009668
ENSG00000120885
Clusterin Clusterin beta chain Clusterin alpha chain
Tissue enhanced
Detected in all
cartilage:
638.2
CLVS1
ENSSSCG00000006230
ENSG00000177182
Clavesin 1
Tissue enhanced
Detected in many
brain:
37.4
pineal gland:
20.6
CMAH
ENSSSCG00000001099
Cytidine monophosphate-N-acetylneuraminic acid hydroxylase
Tissue enhanced
Detected in many
esophagus:
62.7
salivary gland:
55.2
upper respiratory system:
109.7
CMPK2
ENSSSCG00000008647
ENSG00000134326
Cytidine/uridine monophosphate kinase 2
Tissue enhanced
Detected in many
small intestine:
30.4
stomach:
30.7
CMTM8
ENSSSCG00000022618
ENSG00000170293
CKLF like MARVEL transmembrane domain containing 8
Tissue enhanced
Detected in many
male glands:
57.0
CNN1
ENSSSCG00000013614
ENSG00000130176
Calponin-1
Tissue enhanced
Detected in many
smooth muscle:
549.0
urinary bladder:
230.6
CNNM1
ENSSSCG00000010536
ENSG00000119946
Cyclin and CBS domain divalent metal cation transport mediator 1
Tissue enhanced
Detected in many
brain:
28.9
endometrium:
9.9
CNTFR
ENSSSCG00000010974
ENSG00000122756
Ciliary neurotrophic factor receptor
Tissue enhanced
Detected in many
urinary bladder:
60.4
COL11A1
ENSSSCG00000006857
ENSG00000060718
Collagen type XI alpha 1 chain
Tissue enriched
Detected in many
cartilage:
170.9
COL11A2
ENSSSCG00000001473
ENSG00000204248
Collagen type XI alpha 2 chain
Tissue enriched
Detected in some
cartilage:
294.3
COL12A1
ENSSSCG00000004484
ENSG00000111799
Collagen type XII alpha 1 chain
Tissue enhanced
Detected in many
cartilage:
157.9
COL15A1
ENSSSCG00000005380
ENSG00000204291
Collagen type XV alpha 1 chain
Tissue enhanced
Detected in many
cartilage:
116.3
COL16A1
ENSSSCG00000003603
ENSG00000084636
Collagen type XVI alpha 1 chain
Tissue enriched
Detected in many
cartilage:
140.4
COL18A1
ENSSSCG00000038089
ENSG00000182871
Collagen type XVIII alpha 1 chain
Tissue enhanced
Detected in many
liver:
94.5
COL1A1
ENSSSCG00000036135
ENSG00000108821
Collagen type I alpha 1 chain
Tissue enhanced
Detected in many
dura mater:
410.3
COL1A2
ENSSSCG00000015326
ENSG00000164692
Collagen alpha-2(I) chain precursor
Tissue enhanced
Detected in many
dura mater:
322.8
COL23A1
ENSSSCG00000014029
ENSG00000050767
Collagen type XXIII alpha 1 chain
Tissue enhanced
Detected in many
ductus deferens:
29.1
epididymis:
45.5
thyroid gland:
24.9
COL28A1
ENSSSCG00000015342
ENSG00000215018
Collagen type XXVIII alpha 1 chain
Tissue enriched
Detected in many
vagus nerve:
84.0
COL2A1
ENSSSCG00000025523
ENSG00000139219
Collagen type II alpha 1 chain
Tissue enriched
Detected in some
cartilage:
1246.4
COL4A2
ENSSSCG00000009545
ENSG00000134871
Collagen type IV alpha 2 chain
Tissue enhanced
Detected in many
adipose tissue:
88.3
lens:
90.1
COL4A5
ENSSSCG00000012572
ENSG00000188153
Collagen type IV alpha 5 chain
Tissue enriched
Detected in many
lens:
107.3
COL5A3
ENSSSCG00000013667
ENSG00000080573
Collagen alpha-3(V) chain precursor
Tissue enhanced
Detected in many
adipose tissue:
67.0
aorta:
38.8
bone marrow:
48.9
COL6A2
ENSSSCG00000028022
ENSG00000142173
Collagen type VI alpha 2 chain
Tissue enhanced
Detected in all
cartilage:
281.6
synovial tissue:
155.1
COL6A6
ENSSSCG00000037430
ENSG00000206384
Collagen type VI alpha 6 chain
Tissue enhanced
Detected in many
adipose tissue:
23.6
heart:
21.3
lymphoid tissue:
18.9
COLEC12
ENSSSCG00000040397
ENSG00000158270
Collectin subfamily member 12
Tissue enhanced
Detected in many
cartilage:
131.9
synovial tissue:
54.7
COLGALT2
ENSSSCG00000030217
ENSG00000198756
Collagen beta(1-O)galactosyltransferase 2
Tissue enhanced
Detected in many
cartilage:
67.3
cornea:
37.8
COMP
ENSSSCG00000013916
ENSG00000105664
Cartilage oligomeric matrix protein
Tissue enriched
Detected in some
cartilage:
691.8
COX4I2
ENSSSCG00000038384
ENSG00000131055
Cytochrome c oxidase subunit 4I2
Tissue enhanced
Detected in many
cartilage:
113.6
CPE
ENSSSCG00000008854
ENSG00000109472
Carboxypeptidase E precursor
Tissue enhanced
Detected in many
brain:
78.2
pineal gland:
88.9
pituitary gland:
38.4
CPN1
ENSSSCG00000010545
ENSG00000120054
Carboxypeptidase N subunit 1
Tissue enhanced
Detected in all
cartilage:
64.6
liver:
42.0
CPNE6
ENSSSCG00000002011
ENSG00000100884
Copine 6
Tissue enriched
Detected in some
brain:
76.3
CRABP2
ENSSSCG00000006472
ENSG00000143320
Cellular retinoic acid-binding protein 2
Tissue enhanced
Detected in many
brain:
53.9
cartilage:
35.4
mouth:
67.3
CREB5
ENSSSCG00000016690
ENSG00000146592
CAMP responsive element binding protein 5
Tissue enhanced
Detected in many
cartilage:
153.5
synovial tissue:
46.5
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