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Human disease related genes
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UMAP gene cluster
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Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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1362 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
AXIN2
ENSSSCG00000017265
ENSG00000168646
Axin 2
Tissue enhanced
Detected in all
cartilage:
55.2
B2M
ENSSSCG00000004687
ENSG00000166710
Beta-2-microglobulin
Low tissue specificity
Detected in all
B3GNT3
ENSSSCG00000013886
ENSG00000179913
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3
Tissue enhanced
Detected in many
male glands:
34.7
stomach:
49.8
B4GALNT1
ENSSSCG00000000433
ENSG00000135454
Beta-1,4-N-acetyl-galactosaminyltransferase 1
Tissue enhanced
Detected in many
ovary:
43.6
thyroid gland:
23.9
B4GALNT3
ENSSSCG00000033412
ENSG00000139044
Beta-1,4-N-acetyl-galactosaminyltransferase 3
Tissue enhanced
Detected in many
cartilage:
48.3
male glands:
38.6
vagus nerve:
27.0
B4GALT5
ENSSSCG00000007465
ENSG00000158470
Beta-1,4-galactosyltransferase 5
Low tissue specificity
Detected in all
B4GALT6
ENSSSCG00000025005
ENSG00000118276
Beta-1,4-galactosyltransferase 6
Tissue enhanced
Detected in many
brain:
26.8
cartilage:
11.4
ovary:
13.8
pituitary gland:
12.2
BAIAP2L1
ENSSSCG00000007602
ENSG00000006453
BAI1 associated protein 2 like 1
Tissue enhanced
Detected in many
large intestine:
36.2
stomach:
45.9
BARX1
ENSSSCG00000008081
ENSG00000131668
BARX homeobox 1
Tissue enriched
Detected in some
cartilage:
70.4
BCAM
ENSSSCG00000020657
ENSG00000187244
Basal cell adhesion molecule (Lutheran blood group)
Tissue enhanced
Detected in all
adipose tissue:
141.6
aorta:
88.3
BCAR3
ENSSSCG00000006893
ENSG00000137936
BCAR3, NSP family adaptor protein
Low tissue specificity
Detected in all
BCAS4
ENSSSCG00000007472
ENSG00000124243
Breast carcinoma-amplified sequence 4
Tissue enhanced
Detected in many
lens:
38.4
pineal gland:
27.0
BCL6B
ENSSSCG00000017927
ENSG00000161940
B cell CLL/lymphoma 6B
Tissue enhanced
Detected in many
mesothelial tissue:
30.0
BDNF
ENSSSCG00000013333
ENSG00000176697
Brain-derived neurotrophic factor
Tissue enhanced
Detected in many
brain:
18.1
pituitary gland:
7.9
BEND4
ENSSSCG00000008802
ENSG00000188848
BEN domain containing 4
Tissue enhanced
Detected in some
cartilage:
50.4
epididymis:
20.3
kidney:
12.3
male glands:
17.5
BEST1
ENSSSCG00000023090
ENSG00000167995
Bestrophin 1
Tissue enhanced
Detected in many
pineal gland:
23.3
retina:
30.1
testis:
29.2
vagus nerve:
23.4
BEX1
ENSSSCG00000012525
Brain expressed, X-linked 1
Group enriched
Detected in many
brain:
54.7
pineal gland:
101.4
pituitary gland:
65.2
BGN
ENSSSCG00000012766
ENSG00000182492
Biglycan
Tissue enhanced
Detected in many
cartilage:
481.4
synovial tissue:
137.3
BHLHE22
ENSSSCG00000006222
ENSG00000180828
Basic helix-loop-helix family member e22
Tissue enhanced
Detected in many
brain:
36.6
BHLHE40
ENSSSCG00000036136
ENSG00000134107
Class E basic helix-loop-helix protein 40
Tissue enhanced
Detected in all
cartilage:
156.2
synovial tissue:
70.3
BHLHE41
ENSSSCG00000028552
ENSG00000123095
Basic helix-loop-helix family member e41
Tissue enhanced
Detected in many
cartilage:
94.7
BICD1
ENSSSCG00000000531
ENSG00000151746
BICD cargo adaptor 1
Tissue enhanced
Detected in many
brain:
42.1
BMP2
ENSSSCG00000039442
ENSG00000125845
Bone morphogenetic protein 2 precursor
Tissue enriched
Detected in many
cartilage:
70.8
BMP6
ENSSSCG00000001027
ENSG00000153162
Bone morphogenetic protein 6 precursor
Tissue enriched
Detected in many
cartilage:
84.5
BMPER
ENSSSCG00000016665
ENSG00000164619
BMP binding endothelial regulator
Tissue enhanced
Detected in many
cartilage:
59.5
BMPR1B
ENSSSCG00000029621
ENSG00000138696
Bone morphogenetic protein receptor type-1B
Tissue enhanced
Detected in many
male glands:
30.2
ovary:
56.6
BMX
ENSSSCG00000012137
ENSG00000102010
BMX non-receptor tyrosine kinase
Low tissue specificity
Detected in all
BNC2
ENSSSCG00000005180
ENSG00000173068
Basonuclin 2
Tissue enhanced
Detected in many
cervix:
56.7
BNIP3
ENSSSCG00000024388
ENSG00000176171
BCL2 interacting protein 3
Tissue enhanced
Detected in all
cartilage:
175.1
lens:
149.3
BRF2
ENSSSCG00000040833
ENSG00000104221
BRF2, RNA polymerase III transcription initiation factor subunit
Low tissue specificity
Detected in all
BST2
ENSSSCG00000033453
ENSG00000130303
Bone marrow stromal antigen 2
Tissue enhanced
Detected in many
lymphoid tissue:
32.5
BZW1
ENSSSCG00000016094
ENSG00000082153
Basic leucine zipper and W2 domain-containing protein 1
Low tissue specificity
Detected in all
C10orf105
ENSSSCG00000038545
ENSG00000214688
Chromosome 10 open reading frame 105
Group enriched
Detected in some
brain:
17.0
cartilage:
9.4
synovial tissue:
16.6
C11orf42
ENSSSCG00000014634
ENSG00000180878
Chromosome 11 open reading frame 42
Tissue enriched
Detected in many
testis:
79.1
C12orf75
ENSSSCG00000031661
ENSG00000235162
Chromosome 12 open reading frame 75
Low tissue specificity
Detected in many
C14orf37
ENSSSCG00000005071
ENSG00000139971
Chromosome 14 open reading frame 37
Tissue enriched
Detected in many
pineal gland:
113.7
C14orf39
ENSSSCG00000005085
ENSG00000179008
Chromosome 14 open reading frame 39
Tissue enhanced
Detected in many
pituitary gland:
21.8
retina:
16.6
testis:
14.7
thyroid gland:
67.1
C15orf59
ENSSSCG00000001916
ENSG00000205363
Chromosome 15 open reading frame 59
Tissue enhanced
Detected in many
brain:
33.5
heart:
32.0
skeletal muscle:
17.8
C17orf50
ENSSSCG00000033580
ENSG00000270806
Chromosome 17 open reading frame 50
Low tissue specificity
Detected in many
C1QTNF1
ENSSSCG00000035511
ENSG00000173918
C1q and TNF related 1
Low tissue specificity
Detected in many
C1QTNF8
ENSSSCG00000032400
ENSG00000184471
C1q and TNF related 8
Tissue enriched
Detected in some
cartilage:
70.6
C1S
ENSSSCG00000039847
ENSG00000182326
Complement C1s subcomponent precursor
Tissue enhanced
Detected in all
liver:
141.3
C2
ENSSSCG00000001422
ENSG00000166278
Complement C2 precursor
Tissue enhanced
Detected in many
liver:
61.2
pineal gland:
31.1
synovial tissue:
38.1
C2CD4D
ENSSSCG00000021540
ENSG00000225556
C2 calcium dependent domain containing 4D
Tissue enhanced
Detected in many
cartilage:
23.9
lymphoid tissue:
34.3
male glands:
20.4
C2orf40
ENSSSCG00000037106
ENSG00000119147
Augurin precursor
Group enriched
Detected in many
cartilage:
221.4
choroid plexus:
64.2
C3
ENSSSCG00000013551
ENSG00000125730
Complement C3 precursor
Tissue enhanced
Detected in many
liver:
357.3
small intestine:
96.6
stomach:
99.9
C3orf84
ENSSSCG00000011380
ENSG00000236980
Chromosome 3 open reading frame 84
Tissue enhanced
Detected in many
fallopian tube:
30.6
testis:
67.2
C5AR2
ENSSSCG00000003113
ENSG00000134830
Complement component 5a receptor 2
Tissue enhanced
Detected in many
cartilage:
39.6
penis:
16.1
C6orf132
ENSSSCG00000036801
ENSG00000188112
Chromosome 6 open reading frame 132
Tissue enhanced
Detected in many
cornea:
85.0
mouth:
39.1
stomach:
38.1
CA11
ENSSSCG00000003147
ENSG00000063180
Carbonic anhydrase-related protein 11 precursor
Tissue enhanced
Detected in many
brain:
50.6
cartilage:
33.0
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