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Human disease related genes
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SLC6A2
ENSSSCG00000002827
ENSG00000103546
Solute carrier family 6 member 2
Tissue enhanced
Detected in many
brain:
20.9
epididymis:
20.1
lung:
11.6
male glands:
23.6
SLC6A20
ENSSSCG00000028643
ENSG00000163817
Solute carrier family 6 member 20
Tissue enhanced
Detected in all
brain:
42.0
choroid plexus:
64.0
SLC6A3
ENSSSCG00000017121
ENSG00000142319
Solute carrier family 6 member 3
Tissue enriched
Detected in some
brain:
106.4
SLC6A4
ENSSSCG00000017797
ENSG00000108576
Solute carrier family 6 member 4
Low tissue specificity
Detected in all
SLC6A5
ENSSSCG00000037705
ENSG00000165970
Solute carrier family 6 member 5
Tissue enriched
Detected in single
brain:
30.8
SLC6A7
ENSSSCG00000014447
ENSG00000011083
Solute carrier family 6 member 7
Group enriched
Detected in many
brain:
24.8
male glands:
8.0
stomach:
25.2
SLC7A10
ENSSSCG00000002864
ENSG00000130876
Solute carrier family 7 member 10
Tissue enhanced
Detected in many
brain:
15.2
mesothelial tissue:
9.5
synovial tissue:
8.0
vagus nerve:
12.3
SLC7A11
ENSSSCG00000022649
ENSG00000151012
Solute carrier family 7 member 11
Tissue enhanced
Detected in many
brain:
41.4
epididymis:
23.8
skin:
23.3
SLC7A14
ENSSSCG00000011748
ENSG00000013293
Probable cationic amino acid transporter
Group enriched
Detected in some
brain:
31.3
pineal gland:
29.8
pituitary gland:
24.9
retina:
9.7
SLC7A2
ENSSSCG00000006987
ENSG00000003989
Cationic amino acid transporter 2
Tissue enriched
Detected in many
liver:
87.6
SLC7A7
ENSSSCG00000002041
ENSG00000155465
Y+L amino acid transporter 1
Tissue enhanced
Detected in many
kidney:
72.2
SLC7A8
ENSSSCG00000002032
ENSG00000092068
Solute carrier family 7 member 8
Tissue enhanced
Detected in many
cervix:
45.4
kidney:
72.3
SLC8A1
ENSSSCG00000036418
ENSG00000183023
Solute carrier family 8 member A1
Tissue enhanced
Detected in many
heart:
71.3
SLC8A2
ENSSSCG00000029567
ENSG00000118160
Solute carrier family 8 member A2
Tissue enriched
Detected in many
brain:
33.4
SLC9A1
ENSSSCG00000003569
ENSG00000090020
Sodium/hydrogen exchanger 1
Tissue enhanced
Detected in many
salivary gland:
58.6
stomach:
67.9
SLC9A3R1
ENSSSCG00000017232
ENSG00000109062
Na(+)/H(+) exchange regulatory cofactor NHE-RF1
Tissue enhanced
Detected in many
kidney:
85.7
SLC9A5
ENSSSCG00000002783
ENSG00000135740
Solute carrier family 9 member A5
Tissue enhanced
Detected in many
brain:
27.5
SLC9A7
ENSSSCG00000012266
ENSG00000065923
Solute carrier family 9 member A7
Tissue enhanced
Detected in many
brain:
38.1
SLC9B2
ENSSSCG00000028101
ENSG00000164038
Solute carrier family 9 member B2
Tissue enhanced
Detected in many
dura mater:
29.9
heart:
30.6
SLCO1A2
ENSSSCG00000000584
ENSG00000084453
Solute carrier organic anion transporter family member 1A2
Tissue enhanced
Detected in many
brain:
34.3
choroid plexus:
35.1
upper respiratory system:
86.1
SLCO1C1
ENSSSCG00000000585
ENSG00000139155
Solute carrier organic anion transporter family member 1C1
Group enriched
Detected in some
brain:
20.6
choroid plexus:
47.5
SLFNL1
ENSSSCG00000003972
ENSG00000171790
Schlafen like 1
Tissue enhanced
Detected in many
testis:
42.8
SLIT1
ENSSSCG00000010512
ENSG00000187122
Slit guidance ligand 1
Tissue enriched
Detected in some
brain:
24.0
SLIT2
ENSSSCG00000008749
ENSG00000145147
Slit guidance ligand 2
Low tissue specificity
Detected in many
SLIT3
ENSSSCG00000017012
ENSG00000184347
Slit guidance ligand 3
Tissue enhanced
Detected in many
lens:
68.2
penis:
66.1
SLITRK1
ENSSSCG00000009485
ENSG00000178235
SLIT and NTRK-like protein 1 precursor
Group enriched
Detected in some
brain:
24.8
vagus nerve:
35.0
SLITRK2
ENSSSCG00000012724
ENSG00000185985
SLIT and NTRK like family member 2
Tissue enhanced
Detected in some
brain:
17.5
retina:
20.9
vagus nerve:
8.0
SLITRK3
ENSSSCG00000011736
ENSG00000121871
SLIT and NTRK like family member 3
Group enriched
Detected in some
brain:
19.7
retina:
9.6
synovial tissue:
20.3
SLITRK4
ENSSSCG00000022091
ENSG00000179542
SLIT and NTRK like family member 4
Tissue enhanced
Detected in many
brain:
21.2
SLITRK6
ENSSSCG00000009486
ENSG00000184564
SLIT and NTRK like family member 6
Tissue enhanced
Detected in many
salivary gland:
36.9
SMAD3
ENSSSCG00000004952
ENSG00000166949
Mothers against decapentaplegic homolog 3
Low tissue specificity
Detected in all
SMAD6
ENSSSCG00000004948
ENSG00000137834
SMAD family member 6
Low tissue specificity
Detected in many
SMAD7
ENSSSCG00000004507
ENSG00000101665
Mothers against decapentaplegic homolog 7
Low tissue specificity
Detected in all
SMAD9
ENSSSCG00000009357
ENSG00000120693
Mothers against decapentaplegic homolog 9
Low tissue specificity
Detected in many
SMARCD3
ENSSSCG00000016435
ENSG00000082014
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
Low tissue specificity
Detected in many
SMCO3
ENSSSCG00000000610
ENSG00000179256
Single-pass membrane protein with coiled-coil domains 3
Tissue enriched
Detected in some
lens:
117.7
SMCO4
ENSSSCG00000031295
ENSG00000166002
Single-pass membrane protein with coiled-coil domains 4
Tissue enhanced
Detected in many
lens:
126.6
male glands:
108.8
salivary gland:
83.3
SMIM3
ENSSSCG00000040151
ENSG00000256235
Small integral membrane protein 3
Low tissue specificity
Detected in all
SMIM32
ENSSSCG00000040031
ENSG00000271824
Small integral membrane protein 32
Tissue enhanced
Detected in many
brain:
27.6
male glands:
20.0
pineal gland:
19.9
SMIM5
ENSSSCG00000038844
ENSG00000204323
Small integral membrane protein 5
Tissue enhanced
Detected in many
cartilage:
53.1
salivary gland:
28.4
SMOC1
ENSSSCG00000002314
ENSG00000198732
SPARC related modular calcium binding 1
Tissue enhanced
Detected in many
brain:
35.5
cartilage:
36.3
lymphoid tissue:
50.0
SMOX
ENSSSCG00000007140
ENSG00000088826
Spermine oxidase
Tissue enhanced
Detected in many
brain:
33.4
SMPD3
ENSSSCG00000002764
ENSG00000103056
Sphingomyelin phosphodiesterase 3
Tissue enriched
Detected in many
cartilage:
115.7
SMTN
ENSSSCG00000010017
ENSG00000183963
Smoothelin
Tissue enhanced
Detected in many
cervix:
122.7
smooth muscle:
139.9
SMURF1
ENSSSCG00000030153
ENSG00000198742
SMAD specific E3 ubiquitin protein ligase 1
Low tissue specificity
Detected in all
SMYD2
ENSSSCG00000015583
ENSG00000143499
N-lysine methyltransferase SMYD2
Tissue enhanced
Detected in all
skeletal muscle:
37.1
SNAI1
ENSSSCG00000032613
ENSG00000124216
Snail family transcriptional repressor 1
Tissue enhanced
Detected in many
mesothelial tissue:
31.7
ovary:
21.2
SNAP23
ENSSSCG00000038735
ENSG00000092531
Synaptosomal-associated protein 23
Low tissue specificity
Detected in all
SNAP25
ENSSSCG00000026985
ENSG00000132639
Synaptosome associated protein 25
Group enriched
Detected in some
brain:
172.9
pineal gland:
48.0
retina:
45.2
SNAP91
ENSSSCG00000004453
ENSG00000065609
Synaptosome associated protein 91
Tissue enhanced
Detected in some
brain:
54.9
choroid plexus:
24.8
pineal gland:
39.4
retina:
34.6
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