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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
13
14
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16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SHISA9
ENSSSCG00000032878
ENSG00000237515
Shisa family member 9
Tissue enriched
Detected in some
brain:
51.9
SHISAL2A
ENSSSCG00000034127
ENSG00000182183
Shisa like 2A
Tissue enhanced
Detected in many
kidney:
12.5
testis:
44.1
SHISAL2B
ENSSSCG00000024514
ENSG00000145642
Shisa like 2B
Tissue enhanced
Detected in many
brain:
24.9
skin:
12.0
SHOX2
ENSSSCG00000025238
ENSG00000168779
Short stature homeobox protein 2
Tissue enhanced
Detected in many
bone marrow:
18.6
synovial tissue:
45.8
SHROOM1
ENSSSCG00000014287
ENSG00000164403
Shroom family member 1
Low tissue specificity
Detected in all
SHROOM3
ENSSSCG00000008984
ENSG00000138771
Shroom family member 3
Tissue enhanced
Detected in many
ductus deferens:
63.6
salivary gland:
51.6
stomach:
71.7
SHROOM4
ENSSSCG00000012309
ENSG00000158352
Shroom family member 4
Low tissue specificity
Detected in many
SHTN1
ENSSSCG00000010665
ENSG00000187164
Shootin 1
Tissue enhanced
Detected in many
brain:
83.8
SIAH3
ENSSSCG00000038733
ENSG00000215475
Siah E3 ubiquitin protein ligase family member 3
Tissue enhanced
Detected in some
brain:
9.8
pineal gland:
23.7
SIPA1
ENSSSCG00000012982
ENSG00000213445
Signal-induced proliferation-associated 1
Tissue enhanced
Detected in many
lymphoid tissue:
53.6
SIPA1L2
ENSSSCG00000010169
ENSG00000116991
Signal induced proliferation associated 1 like 2
Low tissue specificity
Detected in many
SIRT2
ENSSSCG00000026794
ENSG00000068903
NAD-dependent protein deacetylase sirtuin-2
Tissue enhanced
Detected in all
brain:
91.8
SIX1
ENSSSCG00000005087
ENSG00000126778
Homeobox protein SIX1
Tissue enhanced
Detected in many
pituitary gland:
39.5
salivary gland:
31.6
skeletal muscle:
47.3
SIX3
ENSSSCG00000039283
ENSG00000138083
SIX homeobox 3
Group enriched
Detected in some
brain:
16.8
lens:
51.1
pituitary gland:
42.1
retina:
28.4
upper respiratory system:
33.6
SIX5
ENSSSCG00000035791
ENSG00000177045
SIX homeobox 5
Low tissue specificity
Detected in many
SKAP2
ENSSSCG00000016708
ENSG00000005020
Src kinase associated phosphoprotein 2
Low tissue specificity
Detected in many
SKOR1
ENSSSCG00000004956
ENSG00000188779
SKI family transcriptional corepressor 1
Tissue enriched
Detected in some
brain:
14.5
SLA-DMA
ENSSSCG00000001470
ENSG00000204257
SLA-DM alpha chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
51.5
SLA-DMB
ENSSSCG00000001469
ENSG00000242574
MHC class II, DM beta precursor
Low tissue specificity
Detected in many
SLA-DQB1
ENSSSCG00000001457
ENSG00000179344,ENSG00000232629
SLA class II histocompatibility antigen, DQ haplotype C beta chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
129.0
SLAIN1
ENSSSCG00000009475
ENSG00000139737
SLAIN motif family member 1
Tissue enriched
Detected in many
brain:
95.7
SLC10A4
ENSSSCG00000008823
ENSG00000145248
Solute carrier family 10 member 4
Group enriched
Detected in some
brain:
36.6
pineal gland:
14.4
SLC12A1
ENSSSCG00000004659
ENSG00000074803
Solute carrier family 12 member 1
Tissue enriched
Detected in some
kidney:
142.8
SLC12A5
ENSSSCG00000007437
ENSG00000124140
Solute carrier family 12 member 5
Group enriched
Detected in some
brain:
42.1
pineal gland:
24.2
retina:
32.8
SLC12A7
ENSSSCG00000034302
ENSG00000113504
Solute carrier family 12 member 7
Tissue enhanced
Detected in many
heart:
47.8
SLC13A3
ENSSSCG00000035906
ENSG00000158296
Solute carrier family 13 member 3
Tissue enriched
Detected in some
kidney:
93.6
SLC13A4
ENSSSCG00000016527
ENSG00000164707
Solute carrier family 13 member 4
Tissue enriched
Detected in many
choroid plexus:
164.0
SLC14A1
ENSSSCG00000004492
ENSG00000141469
Solute carrier family 14 member 1 (Kidd blood group)
Tissue enhanced
Detected in all
brain:
34.6
kidney:
39.0
SLC15A2
ENSSSCG00000030305
ENSG00000163406
Solute carrier family 15 member 2
Tissue enhanced
Detected in many
lymphoid tissue:
37.7
SLC15A3
ENSSSCG00000013114
ENSG00000110446
Solute carrier family 15 member 3
Tissue enhanced
Detected in many
lymphoid tissue:
33.7
synovial tissue:
44.0
SLC16A11
ENSSSCG00000017925
ENSG00000174326
Solute carrier family 16 member 11
Tissue enhanced
Detected in many
lung:
29.4
male glands:
32.1
thyroid gland:
34.2
upper respiratory system:
45.3
SLC16A12
ENSSSCG00000010455
ENSG00000152779
Solute carrier family 16 member 12
Tissue enhanced
Detected in all
kidney:
52.5
liver:
34.1
SLC16A6
ENSSSCG00000017262
ENSG00000108932
Solute carrier family 16 member 6
Tissue enriched
Detected in many
choroid plexus:
84.7
SLC16A7
ENSSSCG00000000456
ENSG00000118596
Solute carrier family 16 member 7
Tissue enhanced
Detected in many
heart:
60.6
SLC17A6
ENSSSCG00000013343
ENSG00000091664
Solute carrier family 17 member 6
Tissue enriched
Detected in some
brain:
31.0
SLC17A8
ENSSSCG00000038946
ENSG00000179520
Solute carrier family 17 member 8
Tissue enhanced
Detected in some
brain:
9.6
liver:
6.6
retina:
6.0
SLC18A2
ENSSSCG00000020671
ENSG00000165646
Synaptic vesicular amine transporter
Tissue enriched
Detected in many
brain:
65.9
SLC18A3
ENSSSCG00000022274
ENSG00000187714
Solute carrier family 18 member A3
Tissue enriched
Detected in some
brain:
56.8
SLC1A1
ENSSSCG00000005222
ENSG00000106688
Excitatory amino acid transporter 3
Tissue enhanced
Detected in many
brain:
18.7
kidney:
15.9
small intestine:
30.8
SLC1A2
ENSSSCG00000013296
ENSG00000110436
Solute carrier family 1 member 2
Tissue enriched
Detected in some
brain:
89.6
SLC1A4
ENSSSCG00000028282
ENSG00000115902
Solute carrier family 1 member 4
Tissue enhanced
Detected in many
lens:
49.8
skin:
26.5
SLC1A5
ENSSSCG00000003105
ENSG00000105281
Solute carrier family 1 member 5
Tissue enhanced
Detected in many
male glands:
70.1
SLC1A6
ENSSSCG00000013833
ENSG00000105143
Solute carrier family 1 member 6
Group enriched
Detected in some
brain:
39.0
pineal gland:
11.6
SLC22A23
ENSSSCG00000001004
ENSG00000137266
Solute carrier family 22 member 23
Tissue enhanced
Detected in many
stomach:
63.5
upper respiratory system:
42.8
SLC22A6
ENSSSCG00000023571
ENSG00000197901
Solute carrier family 22 member 6
Tissue enhanced
Detected in some
brain:
38.9
kidney:
38.9
vagus nerve:
20.4
SLC22A8
ENSSSCG00000029516
ENSG00000149452
Solute carrier family 22 member 8
Tissue enriched
Detected in many
kidney:
125.6
SLC24A2
ENSSSCG00000005167
ENSG00000155886
Sodium/potassium/calcium exchanger 2
Group enriched
Detected in some
brain:
49.8
epididymis:
19.6
lens:
12.6
pineal gland:
19.5
retina:
20.6
SLC24A3
ENSSSCG00000007100
ENSG00000185052
Solute carrier family 24 member 3
Tissue enhanced
Detected in many
brain:
52.7
SLC24A4
ENSSSCG00000002450
ENSG00000140090
Solute carrier family 24 member 4
Tissue enriched
Detected in some
choroid plexus:
71.8
SLC25A1
ENSSSCG00000010116
ENSG00000100075
Tricarboxylate transport protein, mitochondrial
Low tissue specificity
Detected in all
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