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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Endocrine and metabolic diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Skin diseases
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Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000004082
Tissue enhanced
Detected in all
cervix:
72.3
na
ENSSSCG00000004145
ENSG00000146386
Tissue enhanced
Detected in many
lymphoid tissue:
30.2
na
ENSSSCG00000004207
Tissue enhanced
Detected in many
heart:
47.2
synovial tissue:
42.7
na
ENSSSCG00000004274
ENSG00000112280
Tissue enriched
Detected in some
cartilage:
165.0
na
ENSSSCG00000004302
ENSG00000272514
Tissue enhanced
Detected in many
choroid plexus:
14.9
testis:
46.2
na
ENSSSCG00000004389
Tissue enhanced
Detected in many
skeletal muscle:
45.3
na
ENSSSCG00000004396
Low tissue specificity
Detected in all
na
ENSSSCG00000004406
ENSG00000146360
G-protein coupled receptor 6
Group enriched
Detected in some
brain:
35.0
pituitary gland:
11.1
na
ENSSSCG00000004410
ENSG00000155085
Group enriched
Detected in some
fallopian tube:
31.9
lung:
9.5
testis:
24.0
upper respiratory system:
13.7
na
ENSSSCG00000004415
Tissue enhanced
Detected in many
fallopian tube:
35.3
lung:
13.8
upper respiratory system:
21.8
na
ENSSSCG00000004441
ENSG00000111817
Tissue enhanced
Detected in many
cartilage:
62.7
na
ENSSSCG00000004556
ENSG00000028528
Low tissue specificity
Detected in all
na
ENSSSCG00000004573
Tissue enhanced
Detected in many
male glands:
16.0
small intestine:
16.0
stomach:
43.9
upper respiratory system:
15.6
na
ENSSSCG00000004674
Tissue enriched
Detected in many
brain:
57.1
na
ENSSSCG00000004703
ENSG00000223572,ENSG00000237289
Creatine kinase U-type, mitochondrial
Tissue enhanced
Detected in many
gallbladder:
53.4
large intestine:
124.0
retina:
55.7
na
ENSSSCG00000004781
ENSG00000137843,ENSG00000259288
Tissue enhanced
Detected in many
cornea:
23.6
na
ENSSSCG00000004830
Tissue enhanced
Detected in many
adrenal gland:
33.3
na
ENSSSCG00000004831
Tissue enhanced
Detected in many
brain:
38.7
liver:
24.7
na
ENSSSCG00000004836
ENSG00000179455
Tissue enhanced
Detected in many
brain:
13.1
lens:
11.9
na
ENSSSCG00000004839
ENSG00000166664
Tissue enhanced
Detected in many
brain:
13.3
cornea:
9.7
na
ENSSSCG00000004921
ENSG00000081923
Low tissue specificity
Detected in many
na
ENSSSCG00000005063
Group enriched
Detected in some
choroid plexus:
73.9
pineal gland:
75.5
retina:
27.7
na
ENSSSCG00000005247
ENSG00000119139,ENSG00000285130
Tight junction protein ZO-2
Low tissue specificity
Detected in all
na
ENSSSCG00000005257
ENSG00000083067
Tissue enhanced
Detected in many
choroid plexus:
72.7
lens:
49.2
na
ENSSSCG00000005278
Tissue enhanced
Detected in many
smooth muscle:
96.0
na
ENSSSCG00000005358
ENSG00000107338
Low tissue specificity
Detected in many
na
ENSSSCG00000005457
ENSG00000198121
Lysophosphatidic acid receptor 1
Tissue enhanced
Detected in many
brain:
47.5
cartilage:
77.7
na
ENSSSCG00000005480
Low tissue specificity
Detected in many
na
ENSSSCG00000005481
ENSG00000138835
Tissue enhanced
Detected in many
cartilage:
62.7
na
ENSSSCG00000005518
N-acetyllactosaminide alpha-1,3-galactosyltransferase
Low tissue specificity
Detected in many
na
ENSSSCG00000005623
Tissue enhanced
Detected in all
epididymis:
76.9
na
ENSSSCG00000005638
Neutrophil gelatinase-associated lipocalin precursor
Tissue enhanced
Detected in all
cornea:
148.2
dura mater:
60.0
upper respiratory system:
120.1
na
ENSSSCG00000005658
Tissue enhanced
Detected in all
testis:
74.1
na
ENSSSCG00000005738
ENSG00000160271,ENSG00000285245
Tissue enhanced
Detected in all
lens:
75.1
na
ENSSSCG00000006101
ENSG00000197275,ENSG00000265817
Tissue enhanced
Detected in many
pineal gland:
111.6
retina:
39.3
na
ENSSSCG00000006149
ENSG00000184672
Tissue enhanced
Detected in some
brain:
24.8
lens:
27.6
pineal gland:
21.7
retina:
10.6
na
ENSSSCG00000006196
ENSG00000137571
Tissue enhanced
Detected in many
cornea:
29.3
heart:
23.6
retina:
15.8
skeletal muscle:
26.3
na
ENSSSCG00000006350
ENSG00000072694
Low affinity immunoglobulin gamma Fc region receptor II-b precursor
Tissue enhanced
Detected in many
breast:
112.1
na
ENSSSCG00000006395
Tissue enhanced
Detected in all
stomach:
177.0
na
ENSSSCG00000006491
ENSG00000160781
Progestin and adipoQ receptor family member 6
Tissue enhanced
Detected in many
brain:
79.9
vagus nerve:
25.7
na
ENSSSCG00000006531
ENSG00000143590,ENSG00000251246
Tissue enhanced
Detected in many
brain:
30.4
skin:
39.7
na
ENSSSCG00000006558
Tissue enriched
Detected in some
testis:
154.9
na
ENSSSCG00000006581
ENSG00000188643
Protein S100-A16
Tissue enhanced
Detected in all
brain:
124.8
mouth:
84.1
na
ENSSSCG00000006851
Tissue enhanced
Detected in all
lymphoid tissue:
43.9
na
ENSSSCG00000006881
Group enriched
Detected in some
brain:
10.5
ductus deferens:
5.1
testis:
3.0
na
ENSSSCG00000006963
Tissue enriched
Detected in many
brain:
48.2
na
ENSSSCG00000007178
Low tissue specificity
Detected in all
na
ENSSSCG00000007435
ENSG00000100979
Phospholipid transfer protein precursor
Tissue enhanced
Detected in many
adrenal gland:
223.5
ovary:
87.8
synovial tissue:
57.6
na
ENSSSCG00000007527
ENSG00000124205
Endothelin-3
Tissue enhanced
Detected in all
cornea:
48.1
na
ENSSSCG00000007642
ENSG00000160862
Tissue enhanced
Detected in many
liver:
107.9
male glands:
63.8
salivary gland:
37.7
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