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Keyword
Chromosome
1
2
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7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
IQCD
ENSSSCG00000009877
ENSG00000166578
IQ motif containing D
Tissue enhanced
Detected in many
fallopian tube:
17.0
testis:
31.3
upper respiratory system:
27.7
IQCG
ENSSSCG00000011855
ENSG00000114473
IQ motif containing G
Group enriched
Detected in many
fallopian tube:
26.5
lung:
10.1
testis:
38.2
upper respiratory system:
15.2
IQCJ
ENSSSCG00000011728
ENSG00000214216
IQ motif containing J
Tissue enriched
Detected in some
brain:
27.4
IQGAP2
ENSSSCG00000014088
ENSG00000145703
IQ motif containing GTPase activating protein 2
Low tissue specificity
Detected in many
IQSEC1
ENSSSCG00000027812
ENSG00000144711
IQ motif and Sec7 domain 1
Tissue enhanced
Detected in all
cartilage:
88.9
IQSEC3
ENSSSCG00000000748
ENSG00000120645
IQ motif and Sec7 domain 3
Group enriched
Detected in some
brain:
32.5
retina:
15.0
IQUB
ENSSSCG00000016608
ENSG00000164675
IQ motif and ubiquitin domain containing
Tissue enhanced
Detected in many
fallopian tube:
42.3
testis:
27.4
IRAK2
ENSSSCG00000011570
ENSG00000134070
Interleukin 1 receptor associated kinase 2
Low tissue specificity
Detected in many
IRAK3
ENSSSCG00000000475
ENSG00000090376
Interleukin 1 receptor associated kinase 3
Low tissue specificity
Detected in all
IRAK4
ENSSSCG00000000799
ENSG00000198001
Interleukin-1 receptor-associated kinase 4
Low tissue specificity
Detected in all
IRF9
ENSSSCG00000002002
ENSG00000213928
Interferon regulatory factor 9
Low tissue specificity
Detected in many
IRS1
ENSSSCG00000025729
ENSG00000169047
Insulin receptor substrate 1
Tissue enhanced
Detected in all
skeletal muscle:
58.0
IRS4
ENSSSCG00000031027
ENSG00000133124
Insulin receptor substrate 4
Group enriched
Detected in some
brain:
18.6
choroid plexus:
55.2
pituitary gland:
62.6
IRX2
ENSSSCG00000032074
ENSG00000170561
Iroquois homeobox 2
Tissue enhanced
Detected in many
breast:
24.7
salivary gland:
26.6
IRX6
ENSSSCG00000002830
ENSG00000159387
Iroquois homeobox 6
Group enriched
Detected in some
brain:
12.4
heart:
9.6
kidney:
5.1
retina:
9.1
ISL1
ENSSSCG00000016883
ENSG00000016082
ISL LIM homeobox 1
Tissue enhanced
Detected in many
male glands:
16.6
penis:
36.4
ISLR
ENSSSCG00000001910
ENSG00000129009
Immunoglobulin superfamily containing leucine rich repeat
Tissue enhanced
Detected in many
cartilage:
98.7
vagus nerve:
73.3
ISM1
ENSSSCG00000007073
ENSG00000101230
Isthmin 1
Tissue enhanced
Detected in many
cartilage:
84.7
ISOC1
ENSSSCG00000014258
ENSG00000066583
Isochorismatase domain containing 1
Tissue enhanced
Detected in all
male glands:
35.7
ISYNA1
ENSSSCG00000040524
ENSG00000105655
Inositol-3-phosphate synthase 1
Tissue enhanced
Detected in many
choroid plexus:
135.7
testis:
64.6
ITGA1
ENSSSCG00000016885
ENSG00000213949
Integrin subunit alpha 1
Tissue enhanced
Detected in many
cartilage:
56.4
smooth muscle:
85.1
ITGA11
ENSSSCG00000004961
ENSG00000137809
Integrin subunit alpha 11
Tissue enhanced
Detected in many
dura mater:
26.8
ITGA4
ENSSSCG00000016009
ENSG00000115232
Integrin subunit alpha 4
Tissue enriched
Detected in many
lymphoid tissue:
63.2
ITGA6
ENSSSCG00000015955
ENSG00000091409
Integrin subunit alpha 6
Low tissue specificity
Detected in all
ITGA7
ENSSSCG00000036237
ENSG00000135424
Integrin subunit alpha 7
Tissue enhanced
Detected in many
adipose tissue:
76.7
ITGA8
ENSSSCG00000011046
ENSG00000077943
Integrin subunit alpha 8
Tissue enhanced
Detected in many
cervix:
61.7
endometrium:
34.7
fallopian tube:
40.9
ITGA9
ENSSSCG00000011245
ENSG00000144668
Integrin subunit alpha 9
Tissue enhanced
Detected in many
liver:
66.6
lymphoid tissue:
63.5
ITGAE
ENSSSCG00000017869
ENSG00000083457
Integrin subunit alpha E
Tissue enhanced
Detected in many
lens:
57.9
lymphoid tissue:
25.9
ITGAV
ENSSSCG00000016027
ENSG00000138448
Integrin alpha-V precursor
Tissue enhanced
Detected in all
ovary:
65.8
ITGB4
ENSSSCG00000017204
ENSG00000132470
Integrin subunit beta 4
Tissue enhanced
Detected in many
vagus nerve:
116.2
ITGB8
ENSSSCG00000015375
ENSG00000105855
Integrin beta-8 precursor
Tissue enhanced
Detected in many
brain:
49.6
vagus nerve:
60.5
ITGBL1
ENSSSCG00000009526
ENSG00000198542
Integrin subunit beta like 1
Tissue enhanced
Detected in many
aorta:
29.7
cornea:
42.0
dura mater:
31.8
vagus nerve:
32.9
ITIH4
ENSSSCG00000011453
ENSG00000055955
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
Tissue enhanced
Detected in many
cervix:
61.4
liver:
161.3
ITIH5
ENSSSCG00000011129
ENSG00000123243
Inter-alpha-trypsin inhibitor heavy chain family member 5
Low tissue specificity
Detected in all
ITPR1
ENSSSCG00000023437
ENSG00000150995
Inositol 1,4,5-trisphosphate receptor type 1
Tissue enhanced
Detected in all
cervix:
67.1
ITPR3
ENSSSCG00000001518
ENSG00000096433
Inositol 1,4,5-trisphosphate receptor type 3
Tissue enhanced
Detected in many
stomach:
78.1
IZUMO2
ENSSSCG00000003207
ENSG00000161652
IZUMO family member 2
Tissue enhanced
Detected in many
testis:
28.4
JAG1
ENSSSCG00000007067
ENSG00000101384
Jagged 1
Low tissue specificity
Detected in all
JAG2
ENSSSCG00000002555
ENSG00000184916
Jagged 2
Low tissue specificity
Detected in many
JAM3
ENSSSCG00000015256
ENSG00000166086
Junctional adhesion molecule 3
Tissue enhanced
Detected in all
brain:
51.8
lens:
42.1
JAML
ENSSSCG00000015089
ENSG00000160593
Junctional adhesion molecule-like precursor
Tissue enhanced
Detected in many
brain:
38.7
JCAD
ENSSSCG00000011020
ENSG00000165757
Junctional cadherin 5 associated
Low tissue specificity
Detected in all
JPH1
ENSSSCG00000006174
ENSG00000104369
Junctophilin 1
Tissue enhanced
Detected in many
choroid plexus:
37.4
skeletal muscle:
98.5
JPH3
ENSSSCG00000002653
ENSG00000154118
Junctophilin 3
Group enriched
Detected in some
brain:
36.0
mesothelial tissue:
9.7
JPH4
ENSSSCG00000002014
ENSG00000092051
Junctophilin 4
Group enriched
Detected in many
brain:
44.3
testis:
30.8
JPT1
ENSSSCG00000017213
ENSG00000189159
Hematological and neurological expressed 1 protein
Low tissue specificity
Detected in all
JPT2
ENSSSCG00000008019
ENSG00000206053
Hematological and neurological expressed 1-like protein
Low tissue specificity
Detected in all
JUNB
ENSSSCG00000013735
ENSG00000171223
JunB proto-oncogene, AP-1 transcription factor subunit
Tissue enhanced
Detected in many
synovial tissue:
110.7
JUP
ENSSSCG00000017428
ENSG00000173801
Junction plakoglobin
Low tissue specificity
Detected in all
KANK1
ENSSSCG00000005235
ENSG00000107104
KN motif and ankyrin repeat domains 1
Low tissue specificity
Detected in all
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