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Human disease related genes
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GRIK2
ENSSSCG00000004361
ENSG00000164418
Glutamate ionotropic receptor kainate type subunit 2
Group enriched
Detected in some
brain:
54.3
thyroid gland:
43.1
vagus nerve:
21.4
GRIK3
ENSSSCG00000003640
ENSG00000163873
Glutamate ionotropic receptor kainate type subunit 3
Tissue enhanced
Detected in many
brain:
25.7
ductus deferens:
13.2
vagus nerve:
30.2
GRIK5
ENSSSCG00000003038
ENSG00000105737
Glutamate ionotropic receptor kainate type subunit 5
Tissue enhanced
Detected in many
testis:
30.5
GRIN1
ENSSSCG00000039834
ENSG00000176884
Glutamate ionotropic receptor NMDA type subunit 1
Group enriched
Detected in some
brain:
48.8
male glands:
23.9
GRIN2B
ENSSSCG00000000614
ENSG00000273079
Glutamate ionotropic receptor NMDA type subunit 2B
Tissue enriched
Detected in some
brain:
35.0
GRIN2C
ENSSSCG00000023151
ENSG00000161509
Glutamate ionotropic receptor NMDA type subunit 2C
Group enriched
Detected in some
brain:
31.0
male glands:
35.5
GRIN2D
ENSSSCG00000003133
ENSG00000105464
Glutamate ionotropic receptor NMDA type subunit 2D
Tissue enhanced
Detected in some
brain:
10.5
GRIN3A
ENSSSCG00000005400
ENSG00000198785
Glutamate ionotropic receptor NMDA type subunit 3A
Tissue enhanced
Detected in many
brain:
13.1
GRIN3B
ENSSSCG00000029635
ENSG00000116032
Glutamate ionotropic receptor NMDA type subunit 3B
Tissue enhanced
Detected in many
brain:
11.6
lens:
12.2
GRINA
ENSSSCG00000032796
ENSG00000178719
Glutamate ionotropic receptor NMDA type subunit associated protein 1
Tissue enhanced
Detected in all
testis:
99.3
GRIP1
ENSSSCG00000000478
ENSG00000155974
Glutamate receptor interacting protein 1
Low tissue specificity
Detected in many
GRIP2
ENSSSCG00000011599
ENSG00000144596
Glutamate receptor interacting protein 2
Tissue enhanced
Detected in many
adrenal gland:
23.1
brain:
20.1
skeletal muscle:
16.7
GRK5
ENSSSCG00000010683
ENSG00000198873
G protein-coupled receptor kinase 5
Tissue enriched
Detected in many
cartilage:
92.6
GRM1
ENSSSCG00000004119
ENSG00000152822
Glutamate metabotropic receptor 1
Tissue enriched
Detected in some
brain:
33.4
GRM3
ENSSSCG00000015395
ENSG00000198822
Glutamate metabotropic receptor 3
Tissue enriched
Detected in some
brain:
25.4
GRM4
ENSSSCG00000001523
ENSG00000124493
Glutamate metabotropic receptor 4
Tissue enriched
Detected in some
brain:
76.1
GRM5
ENSSSCG00000029865
ENSG00000168959
Glutamate metabotropic receptor 5
Tissue enriched
Detected in some
brain:
27.7
GRM7
ENSSSCG00000023891
ENSG00000196277
Glutamate metabotropic receptor 7
Tissue enhanced
Detected in all
brain:
19.8
pineal gland:
48.5
GRM8
ENSSSCG00000022865
ENSG00000179603
Glutamate metabotropic receptor 8
Group enriched
Detected in some
brain:
15.3
choroid plexus:
5.3
penis:
17.2
retina:
8.6
GRP
ENSSSCG00000037300
ENSG00000134443
Gastrin releasing peptide
Group enriched
Detected in some
brain:
22.7
cornea:
33.4
GRTP1
ENSSSCG00000009554
ENSG00000139835
Growth hormone regulated TBC protein 1
Tissue enhanced
Detected in many
stomach:
40.1
GSE1
ENSSSCG00000002664
ENSG00000131149
Gse1 coiled-coil protein
Tissue enhanced
Detected in all
lymphoid tissue:
79.7
GSG1L
ENSSSCG00000022785
ENSG00000169181
GSG1 like
Low tissue specificity
Detected in all
GSN
ENSSSCG00000037508
ENSG00000148180
Gelsolin
Tissue enhanced
Detected in all
cartilage:
266.2
heart:
223.1
penis:
327.1
GSTM3
ENSSSCG00000006821
ENSG00000134202
Glutathione S-transferase Mu 3
Tissue enriched
Detected in some
testis:
140.1
GUCA1A
ENSSSCG00000001636
ENSG00000048545
Guanylate cyclase activator 1A
Tissue enriched
Detected in some
retina:
88.0
GUCY1A2
ENSSSCG00000024613
ENSG00000152402
Guanylate cyclase 1 soluble subunit alpha 2
Tissue enhanced
Detected in many
brain:
28.2
lymphoid tissue:
27.3
GUCY1B1
ENSSSCG00000008870
ENSG00000061918
Guanylate cyclase soluble subunit beta-1
Tissue enhanced
Detected in many
pineal gland:
40.0
GULP1
ENSSSCG00000016033
ENSG00000144366
GULP, engulfment adaptor PTB domain containing 1
Tissue enhanced
Detected in many
choroid plexus:
95.7
GXYLT2
ENSSSCG00000011519
ENSG00000172986
Glucoside xylosyltransferase 2
Low tissue specificity
Detected in many
GYG1
ENSSSCG00000011698
ENSG00000163754
Glycogenin 1
Tissue enhanced
Detected in all
cornea:
77.3
skeletal muscle:
55.0
H2AFY2
ENSSSCG00000031713
ENSG00000099284
H2A histone family member Y2
Tissue enhanced
Detected in many
pituitary gland:
15.8
thyroid gland:
21.5
HAAO
ENSSSCG00000038660
ENSG00000162882
3-hydroxyanthranilate 3,4-dioxygenase
Group enriched
Detected in many
kidney:
43.2
liver:
112.9
HAGHL
ENSSSCG00000008003
ENSG00000103253
Hydroxyacylglutathione hydrolase like
Tissue enhanced
Detected in many
male glands:
18.4
HAP1
ENSSSCG00000017427
ENSG00000173805
Huntingtin associated protein 1
Tissue enhanced
Detected in some
brain:
30.5
cervix:
8.9
pineal gland:
12.2
pituitary gland:
9.5
HAPLN2
ENSSSCG00000006478
ENSG00000132702
Hyaluronan and proteoglycan link protein 2
Tissue enriched
Detected in all
brain:
73.3
HAPLN4
ENSSSCG00000034887
ENSG00000187664
Hyaluronan and proteoglycan link protein 4
Tissue enhanced
Detected in many
brain:
47.5
liver:
14.6
small intestine:
12.0
HBB
ENSSSCG00000014725
Hemoglobin subunit beta
Tissue enriched
Detected in many
dura mater:
663.3
HBEGF
ENSSSCG00000014362
ENSG00000113070
Proheparin-binding EGF-like growth factor Heparin-binding EGF-like growth factor
Tissue enhanced
Detected in all
cartilage:
33.7
synovial tissue:
78.6
HBQ1
ENSSSCG00000038804
ENSG00000086506
Hemoglobin subunit theta 1
Low tissue specificity
Detected in many
HCLS1
ENSSSCG00000011884
ENSG00000180353
Hematopoietic cell-specific Lyn substrate 1
Tissue enhanced
Detected in many
lymphoid tissue:
59.9
HCN4
ENSSSCG00000001920
ENSG00000138622
Hyperpolarization activated cyclic nucleotide gated potassium channel 4
Tissue enhanced
Detected in many
brain:
20.0
heart:
20.2
HCRT
ENSSSCG00000017410
ENSG00000161610
Orexin Orexin-A Orexin-B
Tissue enriched
Detected in some
brain:
66.0
HCRTR2
ENSSSCG00000001481
ENSG00000137252
Orexin receptor type 2
Group enriched
Detected in some
brain:
8.5
cornea:
5.0
HCST
ENSSSCG00000002918
ENSG00000126264
Hematopoietic cell signal transducer
Tissue enhanced
Detected in all
lymphoid tissue:
31.9
HDAC1
ENSSSCG00000003613
ENSG00000116478
Histone deacetylase 1
Tissue enhanced
Detected in all
brain:
107.3
ovary:
54.4
HDAC11
ENSSSCG00000028031
ENSG00000163517
Histone deacetylase 11
Group enriched
Detected in all
brain:
25.1
testis:
82.3
HDC
ENSSSCG00000004644
ENSG00000140287
Histidine decarboxylase
Low tissue specificity
Detected in all
HDX
ENSSSCG00000038744
ENSG00000165259
Highly divergent homeobox
Tissue enhanced
Detected in some
brain:
13.3
pineal gland:
10.0
HECTD2
ENSSSCG00000020912
ENSG00000165338
HECT domain E3 ubiquitin protein ligase 2
Tissue enhanced
Detected in many
brain:
43.7
male glands:
22.5
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