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Gene name
Human disease related genes
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UMAP gene cluster
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Subclass
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Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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173 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABCA4
ENSSSCG00000006890
ENSG00000198691
ATP binding cassette subfamily A member 4
Tissue enriched
Detected in some
retina:
95.8
AIPL1
ENSSSCG00000022026
ENSG00000129221
Aryl hydrocarbon receptor interacting protein like 1
Tissue enriched
Detected in some
retina:
79.2
ANKRD33
ENSSSCG00000000231
ENSG00000167612
Ankyrin repeat domain 33
Tissue enriched
Detected in some
retina:
39.0
ARHGEF33
ENSSSCG00000040621
ENSG00000214694
Rho guanine nucleotide exchange factor 33
Tissue enriched
Detected in many
brain:
33.5
ARR3
ENSSSCG00000012379
ENSG00000120500
Arrestin-C
Tissue enriched
Detected in single
retina:
137.5
BARHL1
ENSSSCG00000005730
ENSG00000125492
BarH like homeobox 1
Tissue enriched
Detected in single
brain:
17.2
BARHL2
ENSSSCG00000006914
ENSG00000143032
BarH like homeobox 2
Tissue enriched
Detected in some
brain:
33.7
BHLHE23
ENSSSCG00000031937
ENSG00000125533
Basic helix-loop-helix family member e23
Tissue enriched
Detected in some
retina:
18.7
C2orf71
ENSSSCG00000024725
ENSG00000179270
Chromosome 2 open reading frame 71
Group enriched
Detected in some
choroid plexus:
47.5
retina:
35.6
CABP2
ENSSSCG00000020764
ENSG00000167791
Calcium binding protein 2
Group enriched
Detected in many
pineal gland:
14.4
retina:
26.1
CABP4
ENSSSCG00000012906
ENSG00000175544
Calcium binding protein 4
Group enriched
Detected in some
lymphoid tissue:
12.7
retina:
43.3
CABP5
ENSSSCG00000003126
ENSG00000105507
Calcium binding protein 5
Group enriched
Detected in some
pineal gland:
59.2
retina:
70.6
CACNA1F
ENSSSCG00000012298
ENSG00000102001
Calcium voltage-gated channel subunit alpha1 F
Tissue enriched
Detected in some
retina:
42.1
CACNA2D4
ENSSSCG00000026537
ENSG00000151062
Calcium voltage-gated channel auxiliary subunit alpha2delta 4
Group enriched
Detected in some
pineal gland:
15.2
retina:
57.8
CBLN3
ENSSSCG00000001985
ENSG00000139899
Cerebellin-3 precursor
Tissue enriched
Detected in some
brain:
118.2
CHRNB3
ENSSSCG00000026363
ENSG00000147432
Cholinergic receptor nicotinic beta 3 subunit
Tissue enhanced
Detected in some
brain:
27.4
retina:
15.2
testis:
6.4
CLUL1
ENSSSCG00000039398
ENSG00000079101
Clusterin like 1
Group enriched
Detected in some
pineal gland:
47.3
retina:
134.4
CNGA1
ENSSSCG00000038160
ENSG00000198515
Cyclic nucleotide gated channel alpha 1
Tissue enriched
Detected in some
retina:
72.5
CNGB3
ENSSSCG00000006134
ENSG00000170289
Cyclic nucleotide gated channel beta 3
Tissue enriched
Detected in some
pineal gland:
110.0
CPLX3
ENSSSCG00000001895
ENSG00000213578
Complexin 3
Tissue enriched
Detected in some
retina:
81.8
CPLX4
ENSSSCG00000004909
ENSG00000166569
Complexin 4
Group enriched
Detected in some
pineal gland:
120.0
retina:
127.0
CRABP1
ENSSSCG00000021873
ENSG00000166426
Cellular retinoic acid-binding protein 1
Tissue enriched
Detected in many
pineal gland:
321.9
CRX
ENSSSCG00000003124
ENSG00000105392
Cone-rod homeobox
Group enriched
Detected in some
pineal gland:
75.0
retina:
160.6
CYP27C1
ENSSSCG00000031497
ENSG00000186684
Cytochrome P450 family 27 subfamily C member 1
Tissue enhanced
Detected in many
brain:
6.3
DRD4
ENSSSCG00000012851
ENSG00000069696
Dopamine receptor D4
Tissue enriched
Detected in some
retina:
113.1
EN2
ENSSSCG00000035324
ENSG00000164778
Engrailed homeobox 2
Tissue enriched
Detected in single
brain:
41.0
ESRRB
ENSSSCG00000002388
ENSG00000119715
Estrogen related receptor beta
Group enriched
Detected in some
kidney:
15.0
retina:
55.7
FGF19
ENSSSCG00000012871
ENSG00000162344
Fibroblast growth factor 19
Group enriched
Detected in some
brain:
2.9
mesothelial tissue:
1.7
retina:
5.9
small intestine:
6.6
FGF20
ENSSSCG00000006980
ENSG00000078579
Fibroblast growth factor 20
Tissue enhanced
Detected in some
brain:
8.6
pituitary gland:
1.8
stomach:
1.7
upper respiratory system:
2.2
FIGLA
ENSSSCG00000008321
ENSG00000183733
Folliculogenesis specific bHLH transcription factor
Tissue enriched
Detected in some
retina:
12.0
FRMPD1
ENSSSCG00000005352
ENSG00000070601
FERM and PDZ domain containing 1
Tissue enriched
Detected in some
retina:
50.7
FSCN2
ENSSSCG00000026155
ENSG00000186765
Fascin actin-bundling protein 2, retinal
Tissue enhanced
Detected in many
choroid plexus:
22.9
pineal gland:
21.6
retina:
57.2
GABRA6
ENSSSCG00000017027
ENSG00000145863
Gamma-aminobutyric acid type A receptor alpha6 subunit
Tissue enriched
Detected in some
brain:
67.3
GABRR2
ENSSSCG00000024249
ENSG00000111886
Gamma-aminobutyric acid type A receptor rho2 subunit
Tissue enriched
Detected in some
retina:
66.0
GFY
ENSSSCG00000035723
ENSG00000261949
Golgi associated olfactory signaling regulator
Group enriched
Detected in some
brain:
13.1
retina:
17.2
testis:
15.0
GNB3
ENSSSCG00000000682
ENSG00000111664
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3
Group enriched
Detected in many
pineal gland:
102.6
retina:
90.3
GNG13
ENSSSCG00000008011
ENSG00000127588
G protein subunit gamma 13
Group enriched
Detected in some
brain:
28.2
retina:
20.9
GPR142
ENSSSCG00000027923
ENSG00000257008
G protein-coupled receptor 142
Tissue enriched
Detected in some
retina:
8.2
GPR151
ENSSSCG00000014415
ENSG00000173250
G protein-coupled receptor 151
Tissue enriched
Detected in single
brain:
12.7
GPR179
ENSSSCG00000020884
ENSG00000277399
G protein-coupled receptor 179
Group enriched
Detected in many
lens:
7.3
retina:
26.4
GRIN2C
ENSSSCG00000023151
ENSG00000161509
Glutamate ionotropic receptor NMDA type subunit 2C
Group enriched
Detected in some
brain:
31.0
male glands:
35.5
GRK1
ENSSSCG00000009562
ENSG00000185974
G protein-coupled receptor kinase 1
Tissue enriched
Detected in some
retina:
73.2
GRK7
ENSSSCG00000011675
ENSG00000114124
Rhodopsin kinase
Tissue enriched
Detected in some
retina:
39.3
GRM6
ENSSSCG00000014027
ENSG00000113262
Glutamate metabotropic receptor 6
Group enriched
Detected in some
pineal gland:
16.7
retina:
44.2
GUCA1A
ENSSSCG00000001636
ENSG00000048545
Guanylate cyclase activator 1A
Tissue enriched
Detected in some
retina:
88.0
GUCA1B
ENSSSCG00000001637
ENSG00000112599
Guanylate cyclase activator 1B
Tissue enriched
Detected in some
retina:
65.9
GUCY2D
ENSSSCG00000025345
ENSG00000132518
Guanylate cyclase 2D, retinal
Tissue enriched
Detected in some
retina:
64.3
IMPG1
ENSSSCG00000004477
ENSG00000112706
Interphotoreceptor matrix proteoglycan 1
Tissue enriched
Detected in single
retina:
109.5
IMPG2
ENSSSCG00000031273
ENSG00000081148
Interphotoreceptor matrix proteoglycan 2
Group enriched
Detected in many
pineal gland:
91.2
retina:
94.7
KCNH6
ENSSSCG00000017295
ENSG00000173826
Potassium voltage-gated channel subfamily H member 6
Group enriched
Detected in some
pineal gland:
26.6
retina:
14.0
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