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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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6
7
8
9
10
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12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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137 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ACP7
ENSSSCG00000002971
ENSG00000183760
Acid phosphatase 7, tartrate resistant (putative)
Tissue enhanced
Detected in some
mouth:
2.9
skin:
12.1
testis:
5.2
ACTBL2
ENSSSCG00000016923
ENSG00000169067
Actin, beta like 2
Tissue enriched
Detected in some
skin:
21.7
ASPRV1
ENSSSCG00000033099
ENSG00000244617
Aspartic peptidase retroviral like 1
Tissue enhanced
Detected in many
skin:
31.6
C1QTNF12
ENSSSCG00000003333
ENSG00000184163
C1q and TNF related 12
Tissue enhanced
Detected in many
skin:
22.9
CALHM1
ENSSSCG00000010601
ENSG00000185933
Calcium homeostasis modulator 1
Tissue enhanced
Detected in some
adrenal gland:
2.8
skin:
4.9
CAPN12
ENSSSCG00000002967
ENSG00000182472
Calpain 12
Tissue enriched
Detected in some
skin:
53.3
DGAT2L6
ENSSSCG00000012381
ENSG00000184210
Diacylglycerol O-acyltransferase 2 like 6
Group enriched
Detected in some
mouth:
20.3
skin:
25.6
DSG4
ENSSSCG00000020740
ENSG00000175065
Desmoglein 4
Tissue enriched
Detected in some
skin:
62.0
FABP9
ENSSSCG00000033728
ENSG00000205186
Fatty acid binding protein 9
Group enriched
Detected in some
choroid plexus:
25.1
skin:
78.7
FBN3
ENSSSCG00000013594
ENSG00000142449
Fibrillin 3
Tissue enriched
Detected in some
skin:
16.9
FGF5
ENSSSCG00000031272
ENSG00000138675
Fibroblast growth factor 5
Tissue enhanced
Detected in many
skin:
11.7
HEPHL1
ENSSSCG00000030461
ENSG00000181333
Hephaestin like 1
Tissue enriched
Detected in some
skin:
54.6
HOXC13
ENSSSCG00000000279
ENSG00000123364
Homeobox C13
Tissue enriched
Detected in some
skin:
50.4
IRX4
ENSSSCG00000017112
ENSG00000113430
Iroquois homeobox 4
Tissue enhanced
Detected in some
breast:
9.3
heart:
23.8
mouth:
7.5
skin:
17.5
KRT25
ENSSSCG00000017464
ENSG00000204897
Keratin 25
Tissue enriched
Detected in some
skin:
155.9
KRT28
ENSSSCG00000017461
ENSG00000173908
Keratin 28
Tissue enriched
Detected in some
skin:
37.0
KRT31
ENSSSCG00000021668
Keratin 31
Tissue enriched
Detected in single
skin:
243.6
KRT32
ENSSSCG00000017439
ENSG00000108759
Keratin 32
Tissue enriched
Detected in some
skin:
89.3
KRT35
ENSSSCG00000017438
ENSG00000197079
Keratin 35
Tissue enriched
Detected in some
skin:
115.3
KRT36
ENSSSCG00000017437
ENSG00000126337
Keratin 36
Group enriched
Detected in some
mouth:
83.3
skin:
22.6
KRT72
ENSSSCG00000000249
ENSG00000170486
Keratin 72
Tissue enriched
Detected in single
skin:
25.7
KRT73
ENSSSCG00000000250
ENSG00000186049
Keratin 73
Tissue enriched
Detected in some
skin:
50.9
KRT74
ENSSSCG00000028334
ENSG00000170484
Keratin 74
Tissue enriched
Detected in some
skin:
37.9
KRT75
ENSSSCG00000000236
ENSG00000170454
Keratin 75
Tissue enriched
Detected in some
skin:
78.0
KRT79
ENSSSCG00000027548
ENSG00000185640
Keratin 79
Tissue enriched
Detected in some
skin:
37.5
KRT82
ENSSSCG00000000235
ENSG00000161850
Keratin 82
Tissue enriched
Detected in some
skin:
96.1
KRT84
ENSSSCG00000000241
ENSG00000161849
Keratin 84
Tissue enriched
Detected in single
mouth:
103.6
KRT85
ENSSSCG00000000240
ENSG00000135443
Keratin 85
Tissue enriched
Detected in some
skin:
167.0
KRTAP11-1
ENSSSCG00000038131
ENSG00000182591
Keratin associated protein 11-1
Tissue enriched
Detected in single
skin:
233.3
KRTAP24-1
ENSSSCG00000021804
ENSG00000188694
Keratin associated protein 24-1
Tissue enriched
Detected in some
skin:
100.3
KRTAP27-1
ENSSSCG00000029297
ENSG00000206107
Keratin associated protein 27-1
Tissue enriched
Detected in some
skin:
23.0
KRTAP3-1
ENSSSCG00000017450
ENSG00000212901
Keratin associated protein 3-1
Tissue enriched
Detected in some
skin:
559.8
KRTAP7-1
ENSSSCG00000027655
ENSG00000274749
Keratin associated protein 7-1 (gene/pseudogene)
Tissue enriched
Detected in some
skin:
11.6
KRTAP8-1
ENSSSCG00000021087
ENSG00000183640
Keratin associated protein 8-1
Tissue enriched
Detected in some
skin:
22.6
LGR5
ENSSSCG00000030511
ENSG00000139292
Leucine-rich repeat-containing G-protein coupled receptor 5 precursor
Tissue enhanced
Detected in many
skin:
34.4
LRRC15
ENSSSCG00000026868
ENSG00000172061
Leucine rich repeat containing 15
Tissue enhanced
Detected in some
adrenal gland:
54.8
dura mater:
10.9
skin:
27.9
MSX2
ENSSSCG00000034500
ENSG00000120149
Msh homeobox 2
Tissue enhanced
Detected in many
choroid plexus:
21.7
endometrium:
22.5
skin:
33.8
MT4
ENSSSCG00000031359
ENSG00000102891
Metallothionein 4
Tissue enriched
Detected in some
skin:
92.6
na
ENSSSCG00000000238
Group enriched
Detected in some
adipose tissue:
9.4
skin:
17.1
na
ENSSSCG00000000239
Tissue enriched
Detected in single
skin:
274.8
na
ENSSSCG00000000247
Tissue enriched
Detected in some
skin:
152.9
na
ENSSSCG00000004213
Group enriched
Detected in some
skin:
7.9
stomach:
2.9
na
ENSSSCG00000005172
Tissue enhanced
Detected in some
skin:
5.4
testis:
7.1
na
ENSSSCG00000006605
ENSG00000215853
Tissue enriched
Detected in some
mouth:
21.3
na
ENSSSCG00000007899
ENSG00000188897
Tissue enhanced
Detected in some
skin:
8.4
na
ENSSSCG00000013090
Tissue enriched
Detected in single
skin:
2.6
na
ENSSSCG00000013805
Tissue enhanced
Detected in single
breast:
1.0
na
ENSSSCG00000017433
Group enriched
Detected in some
cornea:
5.7
mouth:
8.0
skin:
16.7
na
ENSSSCG00000017441
Tissue enriched
Detected in single
skin:
154.9
na
ENSSSCG00000020673
Tissue enriched
Detected in single
skin:
119.4
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