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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
15
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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179 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABCB5
ENSSSCG00000015377
ENSG00000004846
ATP binding cassette subfamily B member 5
Group enriched
Detected in some
ductus deferens:
17.2
epididymis:
64.3
ADAM29
ENSSSCG00000009697
ENSG00000168594
ADAM metallopeptidase domain 29
Group enriched
Detected in some
epididymis:
25.8
male glands:
23.2
testis:
32.5
ASCL4
ENSSSCG00000000159
ENSG00000187855
Achaete-scute family bHLH transcription factor 4
Tissue enriched
Detected in some
epididymis:
19.7
AWAT2
ENSSSCG00000012384
ENSG00000147160
Acyl-CoA wax alcohol acyltransferase 2
Tissue enhanced
Detected in some
epididymis:
21.1
thyroid gland:
8.6
BSP1
ENSSSCG00000003053
Seminal plasma protein pB1 precursor
Tissue enriched
Detected in some
male glands:
499.5
CLDN25
ENSSSCG00000015051
ENSG00000228607
Claudin 25
Tissue enriched
Detected in some
epididymis:
30.6
CLPS
ENSSSCG00000001552
ENSG00000137392
Colipase
Group enriched
Detected in some
adipose tissue:
4.1
ductus deferens:
9.2
epididymis:
13.7
testis:
6.1
CST11
ENSSSCG00000007122
ENSG00000125831
Cystatin 11
Tissue enriched
Detected in some
epididymis:
311.5
CTBS
ENSSSCG00000003758
ENSG00000117151
Chitobiase
Tissue enriched
Detected in some
epididymis:
103.9
DEFB110
ENSSSCG00000001743
ENSG00000203970
Beta-defensin 110 precursor
Tissue enriched
Detected in some
epididymis:
52.3
DEFB114
ENSSSCG00000001741
ENSG00000177684
Beta-defensin 114 precursor
Tissue enriched
Detected in some
epididymis:
18.0
DEFB116
ENSSSCG00000007215
ENSG00000215545
Defensin beta 116
Tissue enriched
Detected in some
epididymis:
104.3
DEFB125
ENSSSCG00000007217
ENSG00000178591
Beta-defensin 125 precursor
Tissue enriched
Detected in single
epididymis:
135.8
DEFB127
ENSSSCG00000035759
ENSG00000088782
Defensin beta 127
Tissue enriched
Detected in some
epididymis:
106.9
DEFB129
ENSSSCG00000007218
ENSG00000125903
Beta-defensin 129 precursor
Tissue enriched
Detected in single
epididymis:
327.3
DEFB135
ENSSSCG00000039911
ENSG00000205883
Defensin beta 135
Group enriched
Detected in some
epididymis:
100.1
male glands:
40.0
ELSPBP1
ENSSSCG00000003125
ENSG00000169393
Epididymal sperm-binding protein 1 precursor
Tissue enriched
Detected in some
epididymis:
206.4
FREM3
ENSSSCG00000040070
ENSG00000183090
FRAS1 related extracellular matrix 3
Tissue enriched
Detected in some
epididymis:
15.6
FRMD7
ENSSSCG00000023618
ENSG00000165694
FERM domain containing 7
Tissue enhanced
Detected in some
brain:
29.2
ductus deferens:
19.7
GPX6
ENSSSCG00000001213
ENSG00000198704
Glutathione peroxidase 6 precursor
Tissue enriched
Detected in some
male glands:
109.1
GREB1L
ENSSSCG00000003699
ENSG00000141449
Growth regulation by estrogen in breast cancer 1 like
Tissue enhanced
Detected in many
ductus deferens:
37.3
epididymis:
62.0
HBE1
ENSSSCG00000014726
ENSG00000213931
Hemoglobin subunit epsilon
Tissue enriched
Detected in some
epididymis:
20.7
HELT
ENSSSCG00000038390
ENSG00000187821
Helt bHLH transcription factor
Tissue enhanced
Detected in some
ductus deferens:
4.9
endometrium:
4.1
epididymis:
19.1
HELZ2
ENSSSCG00000003306
ENSG00000130589
Helicase with zinc finger 2
Tissue enriched
Detected in some
epididymis:
7.6
HOXB1
ENSSSCG00000017532
ENSG00000120094
Homeobox B1
Tissue enriched
Detected in single
epididymis:
4.7
KCNS1
ENSSSCG00000007385
ENSG00000124134
Potassium voltage-gated channel modifier subfamily S member 1
Tissue enhanced
Detected in many
epididymis:
13.1
LAMB4
ENSSSCG00000032905
ENSG00000091128
Laminin subunit beta 4
Tissue enhanced
Detected in many
cornea:
7.2
epididymis:
7.9
skin:
11.4
LCN10
ENSSSCG00000005836
ENSG00000187922
Lipocalin 10
Tissue enriched
Detected in some
epididymis:
55.4
LCN8
ENSSSCG00000021963
ENSG00000204001
Lipocalin 8
Tissue enriched
Detected in some
epididymis:
42.6
MAN2B2
ENSSSCG00000027178
ENSG00000013288
Epididymis-specific alpha-mannosidase precursor
Tissue enriched
Detected in single
epididymis:
415.8
MAT2A
ENSSSCG00000022300
ENSG00000168906
S-adenosylmethionine synthase
Tissue enriched
Detected in all
epididymis:
268.1
MEI1
ENSSSCG00000034405
ENSG00000167077
Meiotic double-stranded break formation protein 1
Tissue enhanced
Detected in many
ductus deferens:
23.6
testis:
10.0
MUC15
ENSSSCG00000013340
ENSG00000169550
Mucin 15, cell surface associated
Tissue enriched
Detected in some
epididymis:
114.0
MYO3B
ENSSSCG00000032177
ENSG00000071909
Myosin IIIB
Group enriched
Detected in some
epididymis:
84.2
retina:
24.6
na
ENSSSCG00000001931
ENSG00000175318
Group enriched
Detected in many
epididymis:
52.2
thyroid gland:
33.3
na
ENSSSCG00000002131
ENSG00000258436
Group enriched
Detected in some
epididymis:
88.5
male glands:
150.0
na
ENSSSCG00000002625
Tissue enhanced
Detected in some
endometrium:
1.1
epididymis:
4.8
upper respiratory system:
1.2
na
ENSSSCG00000002980
Tissue enriched
Detected in some
male glands:
2217.0
na
ENSSSCG00000003367
Tissue enhanced
Detected in some
epididymis:
2.9
heart:
2.6
male glands:
4.0
na
ENSSSCG00000003448
Tissue enriched
Detected in some
epididymis:
5.8
na
ENSSSCG00000005834
Tissue enriched
Detected in some
epididymis:
378.4
na
ENSSSCG00000005835
ENSG00000267206
Tissue enriched
Detected in some
epididymis:
30.2
na
ENSSSCG00000006479
ENSG00000187862
Tissue enriched
Detected in some
epididymis:
62.1
na
ENSSSCG00000007216
ENSG00000215547
Group enriched
Detected in some
epididymis:
43.3
male glands:
79.2
na
ENSSSCG00000007224
Preprobeta-defensin 108-like
Group enriched
Detected in some
ductus deferens:
27.2
epididymis:
7.7
na
ENSSSCG00000012200
Tissue enhanced
Detected in some
ductus deferens:
2.7
male glands:
6.3
skin:
2.4
na
ENSSSCG00000014544
Tissue enriched
Detected in single
epididymis:
55.3
na
ENSSSCG00000014605
Tissue enhanced
Detected in many
epididymis:
8.5
na
ENSSSCG00000014606
Low tissue specificity
Detected in many
na
ENSSSCG00000014608
Tissue enhanced
Detected in many
epididymis:
14.2
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