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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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704 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SYCP2
ENSSSCG00000007529
ENSG00000196074
Synaptonemal complex protein 2
Group enriched
Detected in many
epididymis:
13.9
testis:
55.2
SYCP3
ENSSSCG00000000863
ENSG00000139351
Synaptonemal complex protein 3
Tissue enriched
Detected in single
testis:
76.4
SYNGR4
ENSSSCG00000003131
ENSG00000105467
Synaptogyrin 4
Tissue enriched
Detected in some
testis:
100.7
TAAR5
ENSSSCG00000004185
ENSG00000135569
Trace amine associated receptor 5
Tissue enriched
Detected in single
testis:
3.3
TCP11
ENSSSCG00000001535
ENSG00000124678
T-complex 11
Tissue enriched
Detected in some
testis:
77.1
TCTE3
ENSSSCG00000004009
ENSG00000184786
T-complex-associated-testis-expressed 3
Tissue enriched
Detected in many
testis:
50.5
TDRD1
ENSSSCG00000021075
ENSG00000095627
Tudor domain containing 1
Tissue enriched
Detected in some
testis:
41.8
TDRD6
ENSSSCG00000021218
ENSG00000180113
Tudor domain containing 6
Tissue enriched
Detected in single
testis:
39.8
TERB1
ENSSSCG00000035104
ENSG00000249961
Telomere repeat binding bouquet formation protein 1
Tissue enhanced
Detected in many
testis:
20.9
TEX12
ENSSSCG00000022445
ENSG00000150783
Testis expressed 12
Tissue enriched
Detected in some
testis:
14.2
TEX14
ENSSSCG00000017645
ENSG00000121101
Testis expressed 14, intercellular bridge forming factor
Tissue enriched
Detected in many
testis:
41.3
TEX15
ENSSSCG00000015841
ENSG00000133863
Testis expressed 15, meiosis and synapsis associated
Tissue enriched
Detected in some
testis:
58.0
TEX37
ENSSSCG00000008209
ENSG00000172073
Testis expressed 37
Tissue enriched
Detected in single
testis:
67.9
TEX38
ENSSSCG00000021808
ENSG00000186118
Testis expressed 38
Tissue enriched
Detected in single
testis:
102.6
TEX43
ENSSSCG00000040454
ENSG00000196900
Testis expressed 43
Tissue enriched
Detected in single
testis:
82.9
TEX46
ENSSSCG00000003530
ENSG00000227868
Testis expressed 46
Tissue enriched
Detected in some
testis:
49.7
TEX47
ENSSSCG00000021276
ENSG00000164645
Testis expressed 47
Tissue enriched
Detected in some
testis:
89.9
TEX50
ENSSSCG00000035315
ENSG00000232113
Testis expressed 50
Tissue enriched
Detected in some
testis:
54.3
THEG
ENSSSCG00000014002
ENSG00000105549
Theg spermatid protein
Tissue enriched
Detected in single
testis:
78.3
TIGD3
ENSSSCG00000012994
ENSG00000173825
Tigger transposable element derived 3
Tissue enriched
Detected in some
testis:
25.6
TKTL1
ENSSSCG00000029443
ENSG00000007350
Transketolase like 1
Tissue enriched
Detected in some
testis:
53.2
TKTL2
ENSSSCG00000026079
ENSG00000151005
Transketolase like 2
Tissue enriched
Detected in many
testis:
30.6
TMCO2
ENSSSCG00000036395
ENSG00000188800
Transmembrane and coiled-coil domains 2
Tissue enriched
Detected in some
testis:
60.4
TMCO5A
ENSSSCG00000004794
ENSG00000166069
Transmembrane and coiled-coil domains 5A
Tissue enriched
Detected in single
testis:
97.4
TMEM217
ENSSSCG00000001576
ENSG00000172738
Transmembrane protein 217
Tissue enriched
Detected in single
testis:
35.9
TMEM247
ENSSSCG00000008442
ENSG00000284701
Transmembrane protein 247
Tissue enriched
Detected in many
testis:
34.8
TMEM269
ENSSSCG00000039678
ENSG00000274386
Transmembrane protein 269
Tissue enriched
Detected in many
testis:
52.5
TMEM270
ENSSSCG00000007716
ENSG00000175877
Transmembrane protein 270
Tissue enriched
Detected in some
testis:
37.3
TMEM89
ENSSSCG00000011362
ENSG00000183396
Transmembrane protein 89
Tissue enriched
Detected in some
testis:
32.9
TOMM20L
ENSSSCG00000005075
ENSG00000196860
Translocase of outer mitochondrial membrane 20 like
Tissue enhanced
Detected in many
testis:
15.5
TRIM69
ENSSSCG00000004681
ENSG00000185880
Tripartite motif containing 69
Tissue enriched
Detected in single
testis:
55.7
TRIML1
ENSSSCG00000032493
ENSG00000184108
Tripartite motif family like 1
Tissue enriched
Detected in single
testis:
17.8
TRIML2
ENSSSCG00000006997
ENSG00000179046
Tripartite motif family like 2
Tissue enhanced
Detected in many
testis:
7.6
TSGA10IP
ENSSSCG00000012964
ENSG00000175513
Testis specific 10 interacting protein
Tissue enriched
Detected in some
testis:
30.6
TSGA13
ENSSSCG00000016551
ENSG00000213265
Testis specific 13
Tissue enriched
Detected in some
testis:
62.2
TSKS
ENSSSCG00000003191
ENSG00000126467
Testis specific serine kinase substrate
Tissue enriched
Detected in some
testis:
76.7
TSPAN16
ENSSSCG00000030693
ENSG00000130167
Tetraspanin 16
Tissue enriched
Detected in some
testis:
19.7
TSSK1B
ENSSSCG00000010112
ENSG00000212122
Testis-specific serine/threonine-protein kinase 1
Tissue enriched
Detected in single
testis:
62.3
TSSK2
ENSSSCG00000010113
ENSG00000206203
Testis-specific serine/threonine-protein kinase 2
Tissue enriched
Detected in single
testis:
94.1
TSSK6
ENSSSCG00000013937
ENSG00000178093
Testis-specific serine/threonine-protein kinase 6
Tissue enriched
Detected in single
testis:
84.2
TULP2
ENSSSCG00000003149
ENSG00000104804
Tubby like protein 2
Tissue enriched
Detected in some
testis:
57.3
TXNDC8
ENSSSCG00000005454
ENSG00000204193
Thioredoxin domain-containing protein 8
Tissue enriched
Detected in single
testis:
99.0
USP26
ENSSSCG00000012678
ENSG00000134588
Ubiquitin specific peptidase 26
Tissue enriched
Detected in single
testis:
20.4
USP50
ENSSSCG00000004638
ENSG00000170236
Ubiquitin specific peptidase 50
Tissue enriched
Detected in single
testis:
102.2
UTF1
ENSSSCG00000010771
ENSG00000171794
Undifferentiated embryonic cell transcription factor 1
Group enriched
Detected in some
stomach:
21.6
testis:
9.9
WDR88
ENSSSCG00000002862
ENSG00000166359
WD repeat domain 88
Tissue enriched
Detected in single
testis:
29.6
WNT3
ENSSSCG00000017317
ENSG00000108379
Wnt family member 3
Group enriched
Detected in some
cornea:
38.0
skin:
26.4
testis:
17.9
YOD1
ENSSSCG00000015659
ENSG00000180667
YOD1 deubiquitinase
Tissue enhanced
Detected in all
testis:
57.6
ZAR1
ENSSSCG00000008824
ENSG00000182223
Zygote arrest protein 1
Tissue enriched
Detected in some
testis:
22.0
ZCCHC13
ENSSSCG00000035737
ENSG00000187969
Zinc finger CCHC-type containing 13
Tissue enriched
Detected in single
testis:
47.3
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