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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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704 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000040463
Tissue enriched
Detected in single
testis:
2.2
na
ENSSSCG00000040500
Tissue enhanced
Detected in some
testis:
7.2
na
ENSSSCG00000040514
Tissue enhanced
Detected in single
testis:
1.8
na
ENSSSCG00000040518
Tissue enhanced
Detected in some
adrenal gland:
1.1
pituitary gland:
1.5
testis:
3.0
na
ENSSSCG00000040541
ENSG00000132446
Tissue enriched
Detected in single
testis:
18.3
na
ENSSSCG00000040547
Tissue enriched
Detected in single
testis:
19.8
na
ENSSSCG00000040552
Tissue enhanced
Detected in some
testis:
3.9
na
ENSSSCG00000040604
Tissue enriched
Detected in single
testis:
7.1
na
ENSSSCG00000040626
Tissue enriched
Detected in single
testis:
6.6
na
ENSSSCG00000040694
Tissue enriched
Detected in many
testis:
26.2
na
ENSSSCG00000040744
Tissue enriched
Detected in single
testis:
25.5
na
ENSSSCG00000040791
Tissue enhanced
Detected in some
adipose tissue:
3.0
bone marrow:
2.7
testis:
3.0
na
ENSSSCG00000040795
Tissue enriched
Detected in some
testis:
16.5
na
ENSSSCG00000040799
Tissue enriched
Detected in some
testis:
7.8
na
ENSSSCG00000040800
Tissue enriched
Detected in some
testis:
14.5
na
ENSSSCG00000040821
Tissue enriched
Detected in single
testis:
8.0
na
ENSSSCG00000040858
Tissue enriched
Detected in some
testis:
76.4
na
ENSSSCG00000040862
Tissue enriched
Detected in some
testis:
14.8
na
ENSSSCG00000040927
Tissue enriched
Detected in single
testis:
6.6
na
ENSSSCG00000040950
Tissue enriched
Detected in some
testis:
15.0
na
ENSSSCG00000040963
Tissue enriched
Detected in single
testis:
6.5
NAA11
ENSSSCG00000009258
ENSG00000156269
N(alpha)-acetyltransferase 11, NatA catalytic subunit
Tissue enriched
Detected in single
testis:
20.9
NCBP2L
ENSSSCG00000012562
ENSG00000170935
Nuclear cap binding protein subunit 2 like
Tissue enriched
Detected in single
testis:
32.9
NUTM1
ENSSSCG00000002241
ENSG00000184507
NUT midline carcinoma family member 1
Tissue enriched
Detected in some
testis:
25.2
OAZ3
ENSSSCG00000027091
ENSG00000143450
Sus scrofa ornithine decarboxylase antizyme 3 (OAZ3), transcript variant 2, mRNA.
Tissue enriched
Detected in some
testis:
243.9
ODF3
ENSSSCG00000014555
ENSG00000177947
Outer dense fiber of sperm tails 3
Tissue enriched
Detected in some
testis:
41.8
ODF3L1
ENSSSCG00000001879
ENSG00000182950
Outer dense fiber of sperm tails 3 like 1
Tissue enriched
Detected in some
testis:
27.7
ODF3L2
ENSSSCG00000032811
ENSG00000181781
Outer dense fiber of sperm tails 3 like 2
Tissue enriched
Detected in some
testis:
84.0
OLF42-1
ENSSSCG00000031213
Sus scrofa olfactory receptor-like protein 42-2 (OLF42-2), mRNA.
Tissue enriched
Detected in some
testis:
12.2
OPTC
ENSSSCG00000015272
ENSG00000188770
Opticin precursor
Group enriched
Detected in some
endometrium:
10.5
testis:
13.5
OR10G6
ENSSSCG00000038942
ENSG00000198674
Olfactory receptor family 10 subfamily G member 6
Tissue enhanced
Detected in some
brain:
2.2
testis:
1.7
OR14A16
ENSSSCG00000036754
ENSG00000196772
Olfactory receptor family 14 subfamily A member 16
Tissue enriched
Detected in single
testis:
8.0
OR2Z1
ENSSSCG00000013606
ENSG00000181733
Olfactory receptor family 2 subfamily Z member 1
Tissue enriched
Detected in single
testis:
5.3
OR8D4
ENSSSCG00000015150
ENSG00000181518
Olfactory receptor family 8 subfamily D member 4
Tissue enhanced
Detected in some
heart:
1.0
testis:
4.0
OR9A4
ENSSSCG00000036925
ENSG00000258083
Olfactory receptor family 9 subfamily A member 4
Tissue enhanced
Detected in many
testis:
4.8
OTUB2
ENSSSCG00000002469
ENSG00000089723
OTU deubiquitinase, ubiquitin aldehyde binding 2
Tissue enriched
Detected in many
testis:
38.9
PAGE2B
ENSSSCG00000012346
ENSG00000238269
Putative G antigen family E member 3
Tissue enriched
Detected in some
testis:
58.4
PCDHB1
ENSSSCG00000014377
ENSG00000171815
Protocadherin beta 1
Tissue enriched
Detected in some
testis:
21.1
PDHA2
ENSSSCG00000035705
ENSG00000163114
Pyruvate dehydrogenase E1 alpha 2 subunit
Tissue enriched
Detected in single
testis:
9.4
PFN4
ENSSSCG00000008585
ENSG00000176732
Profilin family member 4
Tissue enriched
Detected in some
testis:
50.6
PGK2
ENSSSCG00000001738
ENSG00000170950
Phosphoglycerate kinase 2
Tissue enriched
Detected in single
testis:
78.4
PIWIL1
ENSSSCG00000009749
ENSG00000125207
Piwi-like protein 1
Tissue enriched
Detected in single
testis:
70.7
PKD2L1
ENSSSCG00000010552
ENSG00000107593
Polycystin 2 like 1, transient receptor potential cation channel
Tissue enriched
Detected in single
testis:
9.4
PKD2L2
ENSSSCG00000026421
ENSG00000078795
Polycystin 2 like 2, transient receptor potential cation channel
Tissue enriched
Detected in some
testis:
92.6
PLA2G2A
ENSSSCG00000003494
ENSG00000188257
Phospholipase A2 group IIA
Tissue enriched
Detected in single
testis:
22.5
PLAC1
ENSSSCG00000031207
ENSG00000170965
Placenta specific 1
Tissue enriched
Detected in some
testis:
34.1
PLD6
ENSSSCG00000039878
ENSG00000179598
Phospholipase D family member 6
Tissue enriched
Detected in some
testis:
51.8
PLEKHG4
ENSSSCG00000002782
ENSG00000196155
Pleckstrin homology and RhoGEF domain containing G4
Tissue enhanced
Detected in some
mouth:
3.8
ovary:
3.2
testis:
11.1
PNLDC1
ENSSSCG00000004046
ENSG00000146453
PARN like, ribonuclease domain containing 1
Tissue enriched
Detected in some
testis:
14.0
PNLIP
ENSSSCG00000010658
ENSG00000175535
Pancreatic triacylglycerol lipase precursor
Tissue enriched
Detected in some
testis:
11.0
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