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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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171 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NAA40
ENSSSCG00000022687
ENSG00000110583
N(alpha)-acetyltransferase 40, NatD catalytic subunit
Low tissue specificity
Detected in all
NAGA
ENSSSCG00000000050
ENSG00000198951
Alpha-N-acetylgalactosaminidase precursor
Low tissue specificity
Detected in all
NASP
ENSSSCG00000029573
ENSG00000132780
Nuclear autoantigenic sperm protein
Tissue enhanced
Detected in all
testis:
51.6
NOL4L
ENSSSCG00000007249
ENSG00000197183
Nucleolar protein 4 like
Low tissue specificity
Detected in all
NR3C2
ENSSSCG00000037766
ENSG00000151623
Nuclear receptor subfamily 3 group C member 2
Low tissue specificity
Detected in all
NR6A1
ENSSSCG00000005589
ENSG00000148200
Nuclear receptor subfamily 6 group A member 1
Tissue enhanced
Detected in all
testis:
33.8
NRTN
ENSSSCG00000033413
ENSG00000171119
Neurturin
Tissue enhanced
Detected in many
heart:
19.8
salivary gland:
9.2
NUAK2
ENSSSCG00000038471
ENSG00000163545
NUAK family kinase 2
Low tissue specificity
Detected in all
OSBPL10
ENSSSCG00000011230
ENSG00000144645
Oxysterol binding protein like 10
Tissue enhanced
Detected in all
testis:
40.0
OSBPL3
ENSSSCG00000016715
ENSG00000070882
Oxysterol binding protein like 3
Low tissue specificity
Detected in many
OSGEP
ENSSSCG00000002138
ENSG00000092094
O-sialoglycoprotein endopeptidase
Low tissue specificity
Detected in all
PBX4
ENSSSCG00000013933
ENSG00000105717
PBX homeobox 4
Tissue enhanced
Detected in many
testis:
41.1
PCGF6
ENSSSCG00000020954
ENSG00000156374
Polycomb group ring finger 6
Low tissue specificity
Detected in all
PIGA
ENSSSCG00000012134
ENSG00000165195
Phosphatidylinositol glycan anchor biosynthesis class A
Low tissue specificity
Detected in all
PLA1A
ENSSSCG00000011895
ENSG00000144837
Phospholipase A1 member A
Tissue enhanced
Detected in all
kidney:
56.9
PLAGL2
ENSSSCG00000007243
ENSG00000126003
PLAG1 like zinc finger 2
Low tissue specificity
Detected in all
PLB1
ENSSSCG00000034756
ENSG00000163803
Phospholipase B1
Tissue enhanced
Detected in many
skin:
25.6
PLEKHA6
ENSSSCG00000015281
ENSG00000143850
Pleckstrin homology domain containing A6
Tissue enhanced
Detected in many
stomach:
67.2
PLEKHA7
ENSSSCG00000013382
ENSG00000166689
Pleckstrin homology domain containing A7
Low tissue specificity
Detected in many
PLPP5
ENSSSCG00000015819
ENSG00000147535
Phospholipid phosphatase 5
Tissue enhanced
Detected in all
male glands:
44.7
PLXNB1
ENSSSCG00000011346
ENSG00000164050
Plexin B1
Low tissue specificity
Detected in all
POC1B
ENSSSCG00000000920
ENSG00000139323
POC1 centriolar protein B
Low tissue specificity
Detected in all
POLD3
ENSSSCG00000027506
ENSG00000077514
DNA polymerase delta subunit 3
Low tissue specificity
Detected in all
POMGNT1
ENSSSCG00000029145
ENSG00000085998
Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
Low tissue specificity
Detected in all
PWWP2B
ENSSSCG00000023681
ENSG00000171813
PWWP domain containing 2B
Tissue enhanced
Detected in many
stomach:
35.8
RAB27A
ENSSSCG00000004612
ENSG00000069974
Ras-related protein Rab-27A
Tissue enhanced
Detected in all
pituitary gland:
55.5
RAD54L
ENSSSCG00000003905
ENSG00000085999
DNA repair and recombination protein RAD54-like
Tissue enhanced
Detected in all
lymphoid tissue:
32.3
RASSF7
ENSSSCG00000012854
ENSG00000099849
Ras association domain family member 7
Tissue enhanced
Detected in many
male glands:
26.0
stomach:
18.0
RBM47
ENSSSCG00000008796
ENSG00000163694
RNA binding motif protein 47
Low tissue specificity
Detected in many
REEP4
ENSSSCG00000009617
ENSG00000168476
Receptor accessory protein 4
Low tissue specificity
Detected in all
RFWD3
ENSSSCG00000002715
ENSG00000168411
Ring finger and WD repeat domain 3
Low tissue specificity
Detected in all
RPS6KA4
ENSSSCG00000028806
ENSG00000162302
Ribosomal protein S6 kinase A4
Tissue enhanced
Detected in all
stomach:
41.7
RTTN
ENSSSCG00000032574
ENSG00000176225
Rotatin
Tissue enhanced
Detected in all
male glands:
45.4
SAT1
ENSSSCG00000012173
ENSG00000130066
Diamine acetyltransferase 1
Tissue enhanced
Detected in all
adrenal gland:
214.6
SCRN2
ENSSSCG00000017521
ENSG00000141295
Secernin 2
Tissue enhanced
Detected in all
kidney:
55.0
SGSM3
ENSSSCG00000000076
ENSG00000100359
Small G protein signaling modulator 3
Tissue enhanced
Detected in all
stomach:
58.9
SIPA1L3
ENSSSCG00000002950
ENSG00000105738
Signal induced proliferation associated 1 like 3
Tissue enhanced
Detected in all
male glands:
62.5
stomach:
62.3
SLC17A9
ENSSSCG00000040931
ENSG00000101194
Solute carrier family 17 member 9
Tissue enhanced
Detected in many
male glands:
40.3
stomach:
33.0
SLC19A1
ENSSSCG00000030696
ENSG00000173638
Solute carrier family 19 member 1
Tissue enhanced
Detected in all
male glands:
40.0
SLC25A2
ENSSSCG00000027249
ENSG00000120329
Solute carrier family 25 member 2
Low tissue specificity
Detected in many
SLC27A4
ENSSSCG00000005648
ENSG00000167114
Solute carrier family 27 member 4
Low tissue specificity
Detected in all
SLC37A3
ENSSSCG00000032266
ENSG00000157800
Sugar phosphate exchanger 3
Tissue enhanced
Detected in all
lymphoid tissue:
43.2
SLC46A3
ENSSSCG00000009322
ENSG00000139508
Solute carrier family 46 member 3 precursor
Tissue enhanced
Detected in all
breast:
40.8
liver:
45.6
salivary gland:
40.3
SLC9A1
ENSSSCG00000003569
ENSG00000090020
Sodium/hydrogen exchanger 1
Tissue enhanced
Detected in many
salivary gland:
58.6
stomach:
67.9
SOWAHD
ENSSSCG00000012618
ENSG00000187808
Sosondowah ankyrin repeat domain family member D
Tissue enhanced
Detected in many
male glands:
9.8
stomach:
14.9
SREBF2
ENSSSCG00000026092
ENSG00000198911
Sterol regulatory element binding transcription factor 2
Tissue enhanced
Detected in all
stomach:
109.7
STXBP2
ENSSSCG00000013576
ENSG00000076944
Syntaxin binding protein 2
Low tissue specificity
Detected in all
TAS1R3
ENSSSCG00000003341
ENSG00000169962
Taste receptor type 1 member 3 precursor
Tissue enhanced
Detected in many
salivary gland:
23.8
TEX49
ENSSSCG00000000174
ENSG00000257987
Testis expressed 49
Tissue enriched
Detected in many
testis:
110.2
TIRAP
ENSSSCG00000022413
ENSG00000150455
TIR domain containing adaptor protein
Low tissue specificity
Detected in all
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