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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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173 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ACOD1
ENSSSCG00000009469
ENSG00000102794
Aconitate decarboxylase 1
Tissue enhanced
Detected in all
lymphoid tissue:
19.0
ANKDD1B
ENSSSCG00000014083
ENSG00000189045
Ankyrin repeat and death domain containing 1B
Tissue enhanced
Detected in all
stomach:
29.3
BID
ENSSSCG00000000769
ENSG00000015475
BH3-interacting domain death agonist
Low tissue specificity
Detected in all
BLM
ENSSSCG00000001816
ENSG00000197299
Bloom syndrome protein
Tissue enhanced
Detected in all
epididymis:
26.5
BRIP1
ENSSSCG00000021384
ENSG00000136492
BRCA1 interacting protein C-terminal helicase 1
Low tissue specificity
Detected in all
BTD
ENSSSCG00000011193
ENSG00000169814
Biotinidase
Low tissue specificity
Detected in all
C14orf93
ENSSSCG00000031452
ENSG00000100802
Chromosome 14 open reading frame 93
Low tissue specificity
Detected in many
C18orf54
ENSSSCG00000004531
ENSG00000166845
Chromosome 18 open reading frame 54
Low tissue specificity
Detected in all
C1orf131
ENSSSCG00000010176
ENSG00000143633
Chromosome 1 open reading frame 131
Low tissue specificity
Detected in all
CCDC68
ENSSSCG00000004534
ENSG00000166510
Coiled-coil domain containing 68
Tissue enhanced
Detected in all
male glands:
26.2
CCNB1
ENSSSCG00000029326
ENSG00000134057
G2/mitotic-specific cyclin-B1
Low tissue specificity
Detected in all
CCNB3
ENSSSCG00000012307
ENSG00000147082
Cyclin B3
Low tissue specificity
Detected in all
CCR4
ENSSSCG00000034660
ENSG00000183813
C-C motif chemokine receptor 4
Tissue enhanced
Detected in many
lymphoid tissue:
16.6
testis:
17.2
CD1D
ENSSSCG00000006452
ENSG00000158473
CD1B antigen precursor
Tissue enriched
Detected in all
lymphoid tissue:
107.9
CD8B
ENSSSCG00000008213
ENSG00000172116,ENSG00000254126
T-cell surface glycoprotein CD8 beta chain precursor
Tissue enriched
Detected in all
lymphoid tissue:
104.7
CDC6
ENSSSCG00000017471
ENSG00000094804
Cell division cycle 6
Tissue enhanced
Detected in all
lymphoid tissue:
19.7
CDCA3
ENSSSCG00000000683
ENSG00000111665
Cell division cycle associated 3
Low tissue specificity
Detected in all
CDCA5
ENSSSCG00000013008
ENSG00000146670
Cell division cycle associated 5
Low tissue specificity
Detected in all
CEP44
ENSSSCG00000032475
ENSG00000164118
Centrosomal protein 44
Tissue enhanced
Detected in all
testis:
27.8
CEP68
ENSSSCG00000008360
ENSG00000011523
Centrosomal protein 68
Low tissue specificity
Detected in all
CHIC2
ENSSSCG00000032645
ENSG00000109220
Cysteine rich hydrophobic domain 2
Tissue enhanced
Detected in all
lymphoid tissue:
39.5
CKS2
ENSSSCG00000021161
ENSG00000123975
CDC28 protein kinase regulatory subunit 2
Low tissue specificity
Detected in all
CLDN19
ENSSSCG00000034921
ENSG00000164007
Claudin-19
Tissue enhanced
Detected in all
kidney:
22.5
vagus nerve:
79.4
CPT2
ENSSSCG00000003851
ENSG00000157184
Carnitine O-palmitoyltransferase 2, mitochondrial precursor
Low tissue specificity
Detected in all
CTSO
ENSSSCG00000008867
ENSG00000256043
Cathepsin O
Tissue enriched
Detected in all
choroid plexus:
64.0
DLGAP5
ENSSSCG00000005056
ENSG00000126787
DLG associated protein 5
Low tissue specificity
Detected in all
DNAJC2
ENSSSCG00000015423
ENSG00000105821
DnaJ heat shock protein family (Hsp40) member C2
Low tissue specificity
Detected in all
DONSON
ENSSSCG00000027089
ENSG00000159147
Downstream neighbor of SON
Low tissue specificity
Detected in all
EDAR
ENSSSCG00000008134
ENSG00000135960
Ectodysplasin A receptor
Low tissue specificity
Detected in all
EOMES
ENSSSCG00000040057
ENSG00000163508
Eomesodermin
Group enriched
Detected in many
brain:
27.8
lymphoid tissue:
24.1
ERP27
ENSSSCG00000000605
ENSG00000139055
Endoplasmic reticulum protein 27
Low tissue specificity
Detected in all
FAM151B
ENSSSCG00000014123
ENSG00000152380
Family with sequence similarity 151 member B
Low tissue specificity
Detected in all
FANCM
ENSSSCG00000005000
ENSG00000187790
Fanconi anemia complementation group M
Low tissue specificity
Detected in all
FBXL12
ENSSSCG00000013670
ENSG00000127452
F-box and leucine rich repeat protein 12
Low tissue specificity
Detected in all
FCER1A
ENSSSCG00000006413
ENSG00000179639
Fc fragment of IgE receptor Ia
Low tissue specificity
Detected in all
GCNT4
ENSSSCG00000029710
ENSG00000176928
Glucosaminyl (N-acetyl) transferase 4, core 2
Tissue enhanced
Detected in all
lymphoid tissue:
20.5
thyroid gland:
30.9
GINS4
ENSSSCG00000037513
ENSG00000147536
GINS complex subunit 4
Low tissue specificity
Detected in all
GK5
ENSSSCG00000011677
ENSG00000175066
Glycerol kinase 5 (putative)
Low tissue specificity
Detected in all
GNLY
ENSSSCG00000008228
ENSG00000115523
Antimicrobial peptide NK-lysin precursor
Low tissue specificity
Detected in all
GPR82
ENSSSCG00000012254
ENSG00000171657
Probable G-protein coupled receptor 82
Tissue enriched
Detected in many
lymphoid tissue:
45.6
GSTK1
ENSSSCG00000035615
ENSG00000197448
Glutathione S-transferase kappa 1
Low tissue specificity
Detected in all
HFE
ENSSSCG00000037682
ENSG00000010704
Hemochromatosis
Tissue enhanced
Detected in all
choroid plexus:
41.3
IDNK
ENSSSCG00000035132
ENSG00000148057
IDNK, gluconokinase
Low tissue specificity
Detected in all
IGFLR1
ENSSSCG00000037542
ENSG00000126246
IGF like family receptor 1
Low tissue specificity
Detected in many
IL12RB1
ENSSSCG00000013894
ENSG00000096996
Interleukin-12 receptor subunit beta-1 precursor
Tissue enhanced
Detected in all
lymphoid tissue:
25.4
IL12RB2
ENSSSCG00000003799
ENSG00000081985
Interleukin-12 receptor subunit beta-2 precursor
Tissue enhanced
Detected in all
lymphoid tissue:
38.6
IL18R1
ENSSSCG00000032795
ENSG00000115604
Interleukin-18 receptor 1 precursor
Tissue enhanced
Detected in all
lymphoid tissue:
36.5
KIFC1
ENSSSCG00000001510
ENSG00000237649
Kinesin family member C1
Low tissue specificity
Detected in all
KRTCAP3
ENSSSCG00000040062
ENSG00000157992
Keratinocyte associated protein 3
Low tissue specificity
Detected in all
LAX1
ENSSSCG00000033768
ENSG00000122188
Lymphocyte transmembrane adaptor 1
Tissue enriched
Detected in all
lymphoid tissue:
65.5
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