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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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656 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
BAP1
ENSSSCG00000011438
ENSG00000163930
BRCA1 associated protein 1
Low tissue specificity
Detected in all
BBOX1
ENSSSCG00000013337
ENSG00000129151
Gamma-butyrobetaine hydroxylase 1
Tissue enhanced
Detected in some
brain:
16.3
kidney:
49.8
liver:
20.6
BCAS1
ENSSSCG00000007485
ENSG00000064787
Breast carcinoma-amplified sequence 1
Group enriched
Detected in many
brain:
128.6
stomach:
34.9
BCAS3
ENSSSCG00000017676
ENSG00000141376
BCAS3, microtubule associated cell migration factor
Low tissue specificity
Detected in all
BEAN1
ENSSSCG00000033191
ENSG00000166546
Brain expressed associated with NEDD4 1
Tissue enhanced
Detected in many
brain:
11.2
BHLHE41
ENSSSCG00000028552
ENSG00000123095
Basic helix-loop-helix family member e41
Tissue enhanced
Detected in many
cartilage:
94.7
BIN1
ENSSSCG00000015720
ENSG00000136717
Myc box-dependent-interacting protein 1
Tissue enhanced
Detected in all
brain:
87.5
skeletal muscle:
140.3
BTBD2
ENSSSCG00000013444
ENSG00000133243
BTB domain containing 2
Low tissue specificity
Detected in all
C15orf59
ENSSSCG00000001916
ENSG00000205363
Chromosome 15 open reading frame 59
Tissue enhanced
Detected in many
brain:
33.5
heart:
32.0
skeletal muscle:
17.8
C17orf67
ENSSSCG00000030781
ENSG00000214226
Chromosome 17 open reading frame 67
Tissue enhanced
Detected in many
brain:
21.9
choroid plexus:
8.7
C1orf122
ENSSSCG00000038888
ENSG00000197982
Chromosome 1 open reading frame 122
Tissue enhanced
Detected in all
lens:
64.4
C9orf85
ENSSSCG00000031105
ENSG00000155621
Chromosome 9 open reading frame 85
Low tissue specificity
Detected in all
CA11
ENSSSCG00000003147
ENSG00000063180
Carbonic anhydrase-related protein 11 precursor
Tissue enhanced
Detected in many
brain:
50.6
cartilage:
33.0
CA5B
ENSSSCG00000012141
ENSG00000169239
Carbonic anhydrase 5B
Tissue enhanced
Detected in all
adipose tissue:
42.3
CACNA2D1
ENSSSCG00000015402
ENSG00000153956
Voltage-dependent calcium channel subunit alpha-2/delta-1 preproprotein
Tissue enhanced
Detected in many
skeletal muscle:
68.7
CACNB2
ENSSSCG00000011040
ENSG00000165995
Calcium voltage-gated channel auxiliary subunit beta 2
Low tissue specificity
Detected in all
CACNG6
ENSSSCG00000003257
ENSG00000130433
Calcium voltage-gated channel auxiliary subunit gamma 6
Tissue enhanced
Detected in many
fallopian tube:
34.7
heart:
23.2
skeletal muscle:
31.8
CADM4
ENSSSCG00000003061
ENSG00000105767
Cell adhesion molecule 4
Group enriched
Detected in all
brain:
54.5
vagus nerve:
53.7
CAMK1
ENSSSCG00000011550
ENSG00000134072
Calcium/calmodulin-dependent protein kinase type 1
Low tissue specificity
Detected in all
CAMK2G
ENSSSCG00000010311
ENSG00000148660
Calcium/calmodulin-dependent protein kinase type II subunit gamma
Low tissue specificity
Detected in all
CAMKK1
ENSSSCG00000017873
ENSG00000004660
Calcium/calmodulin dependent protein kinase kinase 1
Tissue enhanced
Detected in many
lymphoid tissue:
38.2
CAP2
ENSSSCG00000001068
ENSG00000112186
Cyclase associated actin cytoskeleton regulatory protein 2
Tissue enhanced
Detected in many
brain:
50.1
skeletal muscle:
70.3
CARD19
ENSSSCG00000008077
ENSG00000165233
Caspase recruitment domain-containing protein 19 isoform 2
Low tissue specificity
Detected in all
CBX6
ENSSSCG00000040334
ENSG00000183741
Chromobox 6
Low tissue specificity
Detected in all
CCDC85A
ENSSSCG00000008396
ENSG00000055813
Coiled-coil domain containing 85A
Tissue enhanced
Detected in many
heart:
34.5
CCDC85B
ENSSSCG00000012968
ENSG00000175602
Coiled-coil domain containing 85B
Tissue enhanced
Detected in all
brain:
40.7
lens:
68.3
CCND2
ENSSSCG00000038694
ENSG00000118971
G1/S-specific cyclin-D2
Low tissue specificity
Detected in all
CCNI
ENSSSCG00000008987
ENSG00000118816
Cyclin I
Low tissue specificity
Detected in all
CCNY
ENSSSCG00000011107
ENSG00000108100
Cyclin-Y
Tissue enhanced
Detected in all
testis:
85.7
CD38
ENSSSCG00000008742
ENSG00000004468
ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1
Tissue enhanced
Detected in many
brain:
35.6
lymphoid tissue:
15.5
CD99L2
ENSSSCG00000012744
ENSG00000102181
CD99 molecule like 2
Tissue enhanced
Detected in all
lens:
50.5
CDH19
ENSSSCG00000004885
ENSG00000071991
Cadherin 19
Tissue enhanced
Detected in many
ductus deferens:
10.5
vagus nerve:
35.0
CDK14
ENSSSCG00000015307
ENSG00000058091
Cyclin dependent kinase 14
Tissue enhanced
Detected in all
brain:
50.0
CDK19
ENSSSCG00000037424
ENSG00000155111
Cyclin dependent kinase 19
Low tissue specificity
Detected in all
CDS2
ENSSSCG00000030123
ENSG00000101290
Phosphatidate cytidylyltransferase 2
Low tissue specificity
Detected in all
CEP170
ENSSSCG00000030502
ENSG00000143702
Centrosomal protein 170
Low tissue specificity
Detected in all
CHADL
ENSSSCG00000000067
ENSG00000100399
Chondroadherin like
Tissue enriched
Detected in some
cartilage:
80.3
CHSY3
ENSSSCG00000035069
ENSG00000198108
Chondroitin sulfate synthase 3
Tissue enhanced
Detected in many
ovary:
18.7
synovial tissue:
29.2
CLCN2
ENSSSCG00000021581
ENSG00000114859
Chloride voltage-gated channel 2
Tissue enhanced
Detected in many
large intestine:
24.6
vagus nerve:
28.5
CLEC5A
ENSSSCG00000021933
ENSG00000258227
C-type lectin domain family 5 member A
Tissue enhanced
Detected in many
ovary:
7.9
CMTM4
ENSSSCG00000032632
ENSG00000183723
CKLF like MARVEL transmembrane domain containing 4
Low tissue specificity
Detected in many
CMTM5
ENSSSCG00000002028
ENSG00000166091
CKLF-like MARVEL transmembrane domain-containing protein 5
Tissue enhanced
Detected in some
brain:
61.9
heart:
13.2
vagus nerve:
29.0
CNP
ENSSSCG00000017420
ENSG00000173786
2',3'-cyclic nucleotide 3' phosphodiesterase
Group enriched
Detected in all
brain:
221.4
vagus nerve:
74.3
CNRIP1
ENSSSCG00000008349
ENSG00000119865
Cannabinoid receptor interacting protein 1
Tissue enhanced
Detected in many
brain:
52.6
CNTFR
ENSSSCG00000010974
ENSG00000122756
Ciliary neurotrophic factor receptor
Tissue enhanced
Detected in many
urinary bladder:
60.4
COL22A1
ENSSSCG00000005938
ENSG00000169436
Collagen type XXII alpha 1 chain
Tissue enhanced
Detected in many
testis:
12.5
vagus nerve:
33.5
COPS7B
ENSSSCG00000033334
ENSG00000144524
COP9 signalosome subunit 7B
Low tissue specificity
Detected in all
CPNE2
ENSSSCG00000021519
ENSG00000140848
Copine 2
Tissue enhanced
Detected in many
brain:
40.7
choroid plexus:
38.0
CSRNP2
ENSSSCG00000037029
ENSG00000110925
Cysteine and serine rich nuclear protein 2
Low tissue specificity
Detected in all
CST3
ENSSSCG00000037360
ENSG00000101439
Cystatin-C precursor
Low tissue specificity
Detected in all
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