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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Digestive system diseases
Endocrine and metabolic diseases
Immune system diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
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Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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281 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
KLHDC9
ENSSSCG00000038597
ENSG00000162755
Kelch domain containing 9
Low tissue specificity
Detected in all
KLHL35
ENSSSCG00000014854
ENSG00000149243
Kelch like family member 35
Low tissue specificity
Detected in many
LHX5
ENSSSCG00000009869
ENSG00000089116
LIM homeobox 5
Low tissue specificity
Detected in many
LIPT2
ENSSSCG00000024060
ENSG00000175536
Lipoyl(octanoyl) transferase 2
Low tissue specificity
Detected in all
LPCAT2
ENSSSCG00000002828
ENSG00000087253
Lysophosphatidylcholine acyltransferase 2
Low tissue specificity
Detected in all
MED6
ENSSSCG00000034290
ENSG00000133997
Mediator complex subunit 6
Low tissue specificity
Detected in all
METTL17
ENSSSCG00000021718
ENSG00000165792
Methyltransferase-like protein 17, mitochondrial
Low tissue specificity
Detected in all
METTL8
ENSSSCG00000015945
ENSG00000123600
Methyltransferase like 8
Low tissue specificity
Detected in all
MFSD9
ENSSSCG00000038714
ENSG00000135953
Major facilitator superfamily domain containing 9
Low tissue specificity
Detected in all
MRPL1
ENSSSCG00000008990
ENSG00000169288
Mitochondrial ribosomal protein L1
Low tissue specificity
Detected in all
MRPL19
ENSSSCG00000021007
ENSG00000115364
Mitochondrial ribosomal protein L19
Low tissue specificity
Detected in all
MSI1
ENSSSCG00000029365
ENSG00000135097
RNA-binding protein Musashi homolog 1
Tissue enhanced
Detected in all
lens:
43.9
retina:
48.9
MTMR8
ENSSSCG00000023862
ENSG00000102043
Myotubularin related protein 8
Low tissue specificity
Detected in all
MTRF1
ENSSSCG00000009436
ENSG00000120662
Peptide chain release factor 1, mitochondrial
Low tissue specificity
Detected in all
N4BP2L2
ENSSSCG00000009341
ENSG00000244754
NEDD4 binding protein 2 like 2
Low tissue specificity
Detected in all
na
ENSSSCG00000000744
Tissue enhanced
Detected in many
retina:
9.3
na
ENSSSCG00000001982
ENSG00000092009
Low tissue specificity
Detected in many
na
ENSSSCG00000002761
ENSG00000157315
Low tissue specificity
Detected in all
na
ENSSSCG00000002877
ENSG00000089335,ENSG00000197841
Zinc finger protein 181
Low tissue specificity
Detected in all
na
ENSSSCG00000007263
Tissue enriched
Detected in many
upper respiratory system:
59.7
na
ENSSSCG00000009969
Low tissue specificity
Detected in many
na
ENSSSCG00000010068
Tissue enhanced
Detected in all
kidney:
45.8
na
ENSSSCG00000010386
Tissue enhanced
Detected in all
choroid plexus:
21.2
na
ENSSSCG00000010884
Low tissue specificity
Detected in all
na
ENSSSCG00000011931
Low tissue specificity
Detected in all
na
ENSSSCG00000015316
Tissue enhanced
Detected in all
testis:
32.2
na
ENSSSCG00000015429
Low tissue specificity
Detected in many
na
ENSSSCG00000017352
ENSG00000180329
Low tissue specificity
Detected in all
na
ENSSSCG00000017699
Tissue enhanced
Detected in many
heart:
10.5
mesothelial tissue:
9.5
na
ENSSSCG00000017897
Tissue enhanced
Detected in many
testis:
16.3
na
ENSSSCG00000021757
Low tissue specificity
Detected in all
na
ENSSSCG00000022054
Low tissue specificity
Detected in many
na
ENSSSCG00000023172
ENSG00000130021
Low tissue specificity
Detected in all
na
ENSSSCG00000023415
Tissue enriched
Detected in many
liver:
141.0
na
ENSSSCG00000024102
Low tissue specificity
Detected in many
na
ENSSSCG00000024113
Low tissue specificity
Detected in all
na
ENSSSCG00000025187
ENSG00000171202
Transmembrane protein 126A
Low tissue specificity
Detected in all
na
ENSSSCG00000025292
Tissue enhanced
Detected in many
choroid plexus:
10.1
na
ENSSSCG00000026540
Tissue enhanced
Detected in many
heart:
8.5
testis:
13.1
na
ENSSSCG00000027662
ENSG00000198898
Low tissue specificity
Detected in many
na
ENSSSCG00000027974
ENSG00000136897
Low tissue specificity
Detected in all
na
ENSSSCG00000028443
Low tissue specificity
Detected in many
na
ENSSSCG00000028693
Tissue enhanced
Detected in some
brain:
4.6
na
ENSSSCG00000030745
Tissue enhanced
Detected in many
breast:
8.9
male glands:
6.8
retina:
7.4
upper respiratory system:
7.4
na
ENSSSCG00000030951
Low tissue specificity
Detected in all
na
ENSSSCG00000031239
Low tissue specificity
Detected in many
na
ENSSSCG00000031257
Low tissue specificity
Detected in many
na
ENSSSCG00000031464
Tissue enhanced
Detected in many
testis:
10.4
na
ENSSSCG00000031552
Low tissue specificity
Detected in all
na
ENSSSCG00000031722
Low tissue specificity
Detected in all
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