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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Chromosome
1
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9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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204 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PGR
ENSSSCG00000014977
ENSG00000082175
Progesterone receptor
Group enriched
Detected in some
cervix:
95.0
endometrium:
59.6
fallopian tube:
30.2
PHF14
ENSSSCG00000026722
ENSG00000106443
PHD finger protein 14
Low tissue specificity
Detected in all
PIP5K1B
ENSSSCG00000027161
ENSG00000107242
Phosphatidylinositol-4-phosphate 5-kinase type 1 beta
Tissue enhanced
Detected in many
choroid plexus:
94.9
PKHD1L1
ENSSSCG00000006025
ENSG00000205038
PKHD1 like 1
Tissue enhanced
Detected in many
adipose tissue:
16.8
fallopian tube:
30.0
mesothelial tissue:
57.5
PRKCQ
ENSSSCG00000011131
ENSG00000065675
Protein kinase C theta
Tissue enhanced
Detected in all
choroid plexus:
30.7
lymphoid tissue:
36.3
skeletal muscle:
40.3
testis:
32.0
PSTK
ENSSSCG00000010721
ENSG00000179988
Phosphoseryl-tRNA kinase
Low tissue specificity
Detected in all
PXT1
ENSSSCG00000036420
ENSG00000179165
Peroxisomal, testis specific 1
Tissue enhanced
Detected in many
male glands:
22.1
RAB3IP
ENSSSCG00000000500
ENSG00000127328
RAB3A interacting protein
Tissue enhanced
Detected in all
choroid plexus:
60.5
RAD9B
ENSSSCG00000009824
ENSG00000151164
RAD9 checkpoint clamp component B
Low tissue specificity
Detected in all
SCAPER
ENSSSCG00000001865
ENSG00000140386
S-phase cyclin A associated protein in the ER
Low tissue specificity
Detected in all
SIRPB2
ENSSSCG00000007185
ENSG00000196209
Signal regulatory protein beta 2
Tissue enhanced
Detected in all
lymphoid tissue:
24.2
SMYD4
ENSSSCG00000017819
ENSG00000186532
SET and MYND domain containing 4
Low tissue specificity
Detected in all
SP4
ENSSSCG00000015378
ENSG00000105866
Sp4 transcription factor
Low tissue specificity
Detected in all
ST7L
ENSSSCG00000006779
ENSG00000007341
Suppression of tumorigenicity 7 like
Low tissue specificity
Detected in all
STXBP4
ENSSSCG00000017602
ENSG00000166263
Syntaxin binding protein 4
Low tissue specificity
Detected in all
SUGP2
ENSSSCG00000025839
ENSG00000064607
SURP and G-patch domain containing 2
Tissue enhanced
Detected in all
testis:
71.0
SYNRG
ENSSSCG00000026596
ENSG00000275066
Synergin gamma
Low tissue specificity
Detected in all
TIGD7
ENSSSCG00000037309
ENSG00000140993
Tigger transposable element derived 7
Low tissue specificity
Detected in all
TMEM53
ENSSSCG00000027423
ENSG00000126106
Transmembrane protein 53
Low tissue specificity
Detected in all
TOPAZ1
ENSSSCG00000029268
ENSG00000173769
Testis and ovary specific PAZ domain containing 1
Low tissue specificity
Detected in all
TP53BP1
ENSSSCG00000031949
ENSG00000067369
Tumor protein p53 binding protein 1
Low tissue specificity
Detected in all
TXNRD3
ENSSSCG00000023929
ENSG00000197763
Thioredoxin reductase 3
Tissue enhanced
Detected in all
testis:
54.8
VIPAS39
ENSSSCG00000002403
ENSG00000151445
VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
Low tissue specificity
Detected in all
ZC3H8
ENSSSCG00000008099
ENSG00000144161
Zinc finger CCCH-type containing 8
Low tissue specificity
Detected in all
ZMAT1
ENSSSCG00000012512
ENSG00000166432
Zinc finger matrin-type 1
Tissue enhanced
Detected in many
ductus deferens:
34.0
epididymis:
30.3
ZNF132
ENSSSCG00000027987
ENSG00000131849
Zinc finger protein 132
Tissue enhanced
Detected in all
epididymis:
23.7
ZNF175
ENSSSCG00000003233
ENSG00000105497
Zinc finger protein 175
Low tissue specificity
Detected in all
ZNF232
ENSSSCG00000022999
ENSG00000167840
Zinc finger protein 232
Low tissue specificity
Detected in all
ZNF239
ENSSSCG00000029576
ENSG00000196793
Zinc finger protein 239
Low tissue specificity
Detected in all
ZNF268
ENSSSCG00000035148
ENSG00000090612
Zinc finger protein 268
Low tissue specificity
Detected in all
ZNF287
ENSSSCG00000018031
ENSG00000141040
Zinc finger protein 287
Low tissue specificity
Detected in all
ZNF304
ENSSSCG00000034301
ENSG00000131845
Zinc finger protein 304
Low tissue specificity
Detected in all
ZNF331
ENSSSCG00000031793
ENSG00000130844
Zinc finger protein 331
Low tissue specificity
Detected in all
ZNF346
ENSSSCG00000014046
ENSG00000113761
Zinc finger protein 346
Low tissue specificity
Detected in all
ZNF397
ENSSSCG00000039052
ENSG00000186812
Zinc finger protein 397
Low tissue specificity
Detected in all
ZNF470
ENSSSCG00000039914
ENSG00000197016
Zinc finger protein 470
Low tissue specificity
Detected in all
ZNF501
ENSSSCG00000011307
ENSG00000186446
Zinc finger protein 501
Low tissue specificity
Detected in all
ZNF512
ENSSSCG00000008545
ENSG00000243943
Zinc finger protein 512
Low tissue specificity
Detected in all
ZNF544
ENSSSCG00000034027
ENSG00000198131
Zinc finger protein 544
Low tissue specificity
Detected in all
ZNF554
ENSSSCG00000038635
ENSG00000172006
Zinc finger protein 554
Low tissue specificity
Detected in all
ZNF567
ENSSSCG00000002932
ENSG00000189042
Zinc finger protein 567
Low tissue specificity
Detected in all
ZNF568
ENSSSCG00000002935
ENSG00000198453
Zinc finger protein 568
Low tissue specificity
Detected in all
ZNF596
ENSSSCG00000025290
ENSG00000172748
Zinc finger protein 596
Low tissue specificity
Detected in all
ZNF606
ENSSSCG00000003995
ENSG00000166704
Zinc finger protein 606
Low tissue specificity
Detected in all
ZNF613
ENSSSCG00000032585
ENSG00000176024
Zinc finger protein 613
Tissue enhanced
Detected in all
epididymis:
52.2
ZNF619
ENSSSCG00000011271
ENSG00000177873
Zinc finger protein 619
Low tissue specificity
Detected in all
ZNF671
ENSSSCG00000003990
ENSG00000083814
Zinc finger protein 671
Low tissue specificity
Detected in all
ZNF772
ENSSSCG00000038250
ENSG00000197128
Zinc finger protein 772
Low tissue specificity
Detected in all
ZNF782
ENSSSCG00000011167
ENSG00000196597
Zinc finger protein 782
Low tissue specificity
Detected in all
ZNF786
ENSSSCG00000015450
ENSG00000197362
Zinc finger protein 786
Low tissue specificity
Detected in all
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