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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
Cardiovascular diseases
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Other congenital disorders
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
15
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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120 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NKX2-4
ENSSSCG00000007110
ENSG00000125816
NK2 homeobox 4
Group enriched
Detected in some
brain:
4.8
pituitary gland:
7.1
NR0B1
ENSSSCG00000012199
ENSG00000169297
Nuclear receptor subfamily 0 group B member 1
Group enriched
Detected in some
adrenal gland:
13.9
male glands:
12.3
pituitary gland:
4.0
testis:
3.6
NR5A1
ENSSSCG00000005588
ENSG00000136931
Steroidogenic factor 1
Tissue enriched
Detected in some
adrenal gland:
82.9
OR5K4
ENSSSCG00000011986
ENSG00000196098
Olfactory receptor family 5 subfamily K member 4
Tissue enhanced
Detected in some
adrenal gland:
2.9
pituitary gland:
4.6
OTOGL
ENSSSCG00000000943
ENSG00000165899
Otogelin like
Tissue enriched
Detected in some
ductus deferens:
41.3
PAGE4
ENSSSCG00000012303
ENSG00000101951
PAGE family member 4
Group enriched
Detected in some
adrenal gland:
6.6
pituitary gland:
2.0
PAPSS2
ENSSSCG00000010437
ENSG00000198682
3'-phosphoadenosine 5'-phosphosulfate synthase 2
Tissue enhanced
Detected in all
adrenal gland:
43.8
ovary:
53.6
testis:
77.5
POMC
ENSSSCG00000021155
ENSG00000115138
Pro-opiomelanocortin precursor
Tissue enriched
Detected in some
pituitary gland:
930.7
PRL
ENSSSCG00000039721
ENSG00000172179
Prolactin precursor
Tissue enriched
Detected in some
pituitary gland:
654.6
SCAP
ENSSSCG00000026281
ENSG00000114650
Sterol regulatory element-binding protein cleavage-activating protein
Tissue enhanced
Detected in all
ovary:
65.1
SCARB1
ENSSSCG00000009759
ENSG00000073060
Scavenger receptor class B member 1
Group enriched
Detected in all
adrenal gland:
227.5
ovary:
219.7
SOAT1
ENSSSCG00000021464
ENSG00000057252
Sterol O-acyltransferase 1
Tissue enhanced
Detected in all
adrenal gland:
73.7
male glands:
49.9
testis:
31.6
STAR
ENSSSCG00000034942
ENSG00000147465
Steroidogenic acute regulatory protein, mitochondrial precursor
Group enriched
Detected in some
adrenal gland:
171.0
ovary:
176.9
testis:
78.5
TBX19
ENSSSCG00000006299
ENSG00000143178
T-box 19
Tissue enriched
Detected in some
pituitary gland:
44.5
TGFBR3L
ENSSSCG00000040598
ENSG00000260001
Transforming growth factor beta receptor 3 like
Tissue enriched
Detected in many
pituitary gland:
64.9
TMC2
ENSSSCG00000007172
ENSG00000149488
Transmembrane channel like 2
Tissue enhanced
Detected in some
pituitary gland:
4.5
testis:
6.2
TRHR
ENSSSCG00000040768
ENSG00000174417
Thyrotropin releasing hormone receptor
Tissue enhanced
Detected in all
pituitary gland:
24.4
TSHB
ENSSSCG00000006749
ENSG00000134200
Thyrotropin subunit beta precursor
Tissue enriched
Detected in single
pituitary gland:
183.3
VRTN
ENSSSCG00000002361
ENSG00000133980
Vertnin
Group enriched
Detected in some
adrenal gland:
6.1
epididymis:
1.7
ovary:
2.3
ZP4
ENSSSCG00000010141
ENSG00000116996
Zona pellucida sperm-binding protein 4 Processed zona pellucida sperm-binding protein 4
Tissue enriched
Detected in some
adrenal gland:
15.7
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