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Human disease related genes
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UMAP gene cluster
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Subclass
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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836 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MED8
ENSSSCG00000003943
ENSG00000159479
Mediator complex subunit 8
Low tissue specificity
Detected in all
MESD
ENSSSCG00000021587
ENSG00000117899
Mesoderm development LRP chaperone
Low tissue specificity
Detected in all
METTL26
ENSSSCG00000032188
ENSG00000130731
Methyltransferase like 26
Low tissue specificity
Detected in all
MFN2
ENSSSCG00000003434
ENSG00000116688
Mitofusin 2
Tissue enhanced
Detected in all
heart:
59.5
MFSD3
ENSSSCG00000005899
ENSG00000167700
Major facilitator superfamily domain containing 3
Low tissue specificity
Detected in all
MFSD4B
ENSSSCG00000004419
ENSG00000173214
Major facilitator superfamily domain containing 4B
Tissue enhanced
Detected in all
skeletal muscle:
41.0
MGST1
ENSSSCG00000032580
ENSG00000008394
Microsomal glutathione S-transferase 1
Tissue enhanced
Detected in all
liver:
129.2
thyroid gland:
154.6
MGST3
ENSSSCG00000006325
ENSG00000143198
Microsomal glutathione S-transferase 3
Low tissue specificity
Detected in all
MLST8
ENSSSCG00000008044
ENSG00000167965
MTOR associated protein, LST8 homolog
Low tissue specificity
Detected in all
MMACHC
ENSSSCG00000037354
ENSG00000132763
Methylmalonic aciduria and homocystinuria type C protein
Low tissue specificity
Detected in all
MON1A
ENSSSCG00000025791
ENSG00000164077
Vacuolar fusion protein MON1 homolog A
Low tissue specificity
Detected in all
MOSPD3
ENSSSCG00000023255
ENSG00000106330
Motile sperm domain-containing protein 3
Low tissue specificity
Detected in all
MPC1
ENSSSCG00000032916
ENSG00000060762
Mitochondrial pyruvate carrier 1
Low tissue specificity
Detected in all
MRPL10
ENSSSCG00000017519
ENSG00000159111
Mitochondrial ribosomal protein L10
Low tissue specificity
Detected in all
MRPL11
ENSSSCG00000012943
ENSG00000174547
Mitochondrial ribosomal protein L11
Low tissue specificity
Detected in all
MRPL18
ENSSSCG00000004047
ENSG00000112110
Mitochondrial ribosomal protein L18
Low tissue specificity
Detected in all
MRPL2
ENSSSCG00000001658
ENSG00000112651
39S ribosomal protein L2, mitochondrial
Low tissue specificity
Detected in all
MRPL20
ENSSSCG00000033374
ENSG00000242485
Mitochondrial ribosomal protein L20
Low tissue specificity
Detected in all
MRPL24
ENSSSCG00000006469
ENSG00000143314
39S ribosomal protein L24, mitochondrial
Low tissue specificity
Detected in all
MRPL27
ENSSSCG00000023783
ENSG00000108826
Mitochondrial ribosomal protein L27
Low tissue specificity
Detected in all
MRPL28
ENSSSCG00000007984
ENSG00000086504
Mitochondrial ribosomal protein L28
Low tissue specificity
Detected in all
MRPL36
ENSSSCG00000040154
ENSG00000171421
Mitochondrial ribosomal protein L36
Low tissue specificity
Detected in all
MRPL37
ENSSSCG00000032083
ENSG00000116221
Mitochondrial ribosomal protein L37
Tissue enhanced
Detected in all
lens:
78.4
MRPL39
ENSSSCG00000012021
ENSG00000154719
Mitochondrial ribosomal protein L39
Low tissue specificity
Detected in all
MRPL4
ENSSSCG00000013656
ENSG00000105364
Mitochondrial ribosomal protein L4
Low tissue specificity
Detected in all
MRPL41
ENSSSCG00000033694
ENSG00000182154
Mitochondrial ribosomal protein L41
Low tissue specificity
Detected in all
MRPL44
ENSSSCG00000016232
ENSG00000135900
39S ribosomal protein L44, mitochondrial
Low tissue specificity
Detected in all
MRPL48
ENSSSCG00000014829
ENSG00000175581
Mitochondrial ribosomal protein L48
Low tissue specificity
Detected in all
MRPL49
ENSSSCG00000013001
ENSG00000149792
39S ribosomal protein L49, mitochondrial
Low tissue specificity
Detected in all
MRPL51
ENSSSCG00000039662
ENSG00000111639
Mitochondrial ribosomal protein L51
Tissue enhanced
Detected in all
testis:
57.8
MRPL52
ENSSSCG00000002040
ENSG00000172590
39S ribosomal protein L52, mitochondrial
Low tissue specificity
Detected in all
MRPL55
ENSSSCG00000029050
ENSG00000162910
39S ribosomal protein L55, mitochondrial
Low tissue specificity
Detected in all
MRPS12
ENSSSCG00000031860
ENSG00000128626
Mitochondrial ribosomal protein S12
Low tissue specificity
Detected in all
MRPS18A
ENSSSCG00000001692
ENSG00000096080
Mitochondrial ribosomal protein S18A
Low tissue specificity
Detected in all
MRPS18B
ENSSSCG00000029425
ENSG00000204568
28S ribosomal protein S18b, mitochondrial
Low tissue specificity
Detected in all
MRPS24
ENSSSCG00000016724
ENSG00000062582
Mitochondrial ribosomal protein S24
Low tissue specificity
Detected in all
MRPS25
ENSSSCG00000034318
ENSG00000131368
Mitochondrial ribosomal protein S25
Low tissue specificity
Detected in all
MRPS26
ENSSSCG00000007165
ENSG00000125901
Mitochondrial ribosomal protein S26
Low tissue specificity
Detected in all
MRPS28
ENSSSCG00000037782
ENSG00000147586
28S ribosomal protein S28, mitochondrial
Low tissue specificity
Detected in all
MRPS5
ENSSSCG00000008113
ENSG00000144029
Mitochondrial ribosomal protein S5
Low tissue specificity
Detected in all
MRPS6
ENSSSCG00000026981
ENSG00000243927
Mitochondrial ribosomal protein S6
Tissue enhanced
Detected in all
lens:
62.4
male glands:
50.3
MRRF
ENSSSCG00000005532
ENSG00000148187
Mitochondrial ribosome recycling factor
Low tissue specificity
Detected in all
MTHFD1
ENSSSCG00000002269
ENSG00000100714
Methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1
Tissue enhanced
Detected in all
liver:
47.6
MTX1
ENSSSCG00000006523
ENSG00000173171
Metaxin-1
Low tissue specificity
Detected in all
MUT
ENSSSCG00000001732
ENSG00000146085
Methylmalonyl-CoA mutase, mitochondrial precursor
Tissue enhanced
Detected in all
liver:
61.9
MVB12A
ENSSSCG00000036568
ENSG00000141971
Multivesicular body subunit 12A
Low tissue specificity
Detected in all
MYDGF
ENSSSCG00000034898
ENSG00000074842
Myeloid derived growth factor
Tissue enhanced
Detected in all
male glands:
46.8
MYH15
ENSSSCG00000022175
ENSG00000144821
Myosin heavy chain 15
Tissue enhanced
Detected in some
esophagus:
8.4
liver:
6.3
mouth:
5.5
MYORG
ENSSSCG00000033196
ENSG00000164976
Myogenesis regulating glycosidase (putative)
Tissue enhanced
Detected in all
heart:
42.5
skeletal muscle:
45.8
na
ENSSSCG00000000071
Tissue enhanced
Detected in all
lens:
135.9
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