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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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203 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NOX3
ENSSSCG00000004068
ENSG00000074771
NADPH oxidase 3
Tissue enriched
Detected in some
testis:
18.2
NUP210L
ENSSSCG00000038125
ENSG00000143552
Nucleoporin 210 like
Tissue enriched
Detected in some
testis:
50.6
NUPR2
ENSSSCG00000007741
ENSG00000185290
Nuclear protein 2, transcriptional regulator
Tissue enriched
Detected in some
testis:
79.8
ODF1
ENSSSCG00000006056
ENSG00000155087
Outer dense fiber protein 1
Tissue enriched
Detected in single
testis:
209.1
PCSK4
ENSSSCG00000024379
ENSG00000115257
Proprotein convertase subtilisin/kexin type 4
Tissue enriched
Detected in some
testis:
77.8
PGPEP1L
ENSSSCG00000004811
ENSG00000183571
Pyroglutamyl-peptidase I-like
Tissue enhanced
Detected in some
mouth:
5.1
skeletal muscle:
3.3
testis:
13.8
PHF7
ENSSSCG00000011439
ENSG00000010318
PHD finger protein 7
Tissue enriched
Detected in some
testis:
161.2
PIWIL2
ENSSSCG00000030228
ENSG00000197181
Piwi-like protein 2
Group enriched
Detected in some
choroid plexus:
9.2
testis:
35.7
PKDREJ
ENSSSCG00000035583
ENSG00000130943
Polycystin family receptor for egg jelly
Tissue enriched
Detected in single
testis:
115.5
PMFBP1
ENSSSCG00000002747
ENSG00000118557
Polyamine modulated factor 1 binding protein 1
Group enriched
Detected in some
lens:
16.5
testis:
56.6
PRM1
ENSSSCG00000021337
Sperm protamine P1
Tissue enriched
Detected in some
testis:
1334.7
PRM2
ENSSSCG00000024307
Protamine-2 precursor
Tissue enriched
Detected in some
testis:
368.9
PRM3
ENSSSCG00000035607
ENSG00000178257
Protamine 3
Tissue enriched
Detected in some
testis:
187.8
PROCA1
ENSSSCG00000017770
ENSG00000167525
Protein interacting with cyclin A1
Tissue enriched
Detected in some
testis:
77.5
PRR30
ENSSSCG00000008552
ENSG00000186143
Proline rich 30
Tissue enriched
Detected in single
testis:
106.3
QRICH2
ENSSSCG00000021342
ENSG00000129646
Glutamine rich 2
Tissue enriched
Detected in some
testis:
29.7
RNF17
ENSSSCG00000009572
ENSG00000132972
Ring finger protein 17
Tissue enriched
Detected in some
testis:
40.9
RPGRIP1
ENSSSCG00000002129
ENSG00000092200
RPGR interacting protein 1
Group enriched
Detected in many
epididymis:
15.0
retina:
21.4
testis:
51.9
SLC22A14
ENSSSCG00000011255
ENSG00000144671
Solute carrier family 22 member 14
Tissue enriched
Detected in many
testis:
27.2
SMCP
ENSSSCG00000006594
ENSG00000163206
Sperm mitochondrial-associated cysteine-rich protein
Tissue enriched
Detected in single
testis:
196.3
SPACA1
ENSSSCG00000004308
ENSG00000118434
Sperm acrosome membrane-associated protein 1 precursor
Tissue enriched
Detected in some
testis:
72.6
SPATA3
ENSSSCG00000016269
ENSG00000173699
Spermatogenesis-associated protein 3
Tissue enriched
Detected in some
testis:
231.7
SPEM2
ENSSSCG00000024584
ENSG00000184560
SPEM family member 2
Tissue enriched
Detected in some
testis:
148.7
SPERT
ENSSSCG00000009417
ENSG00000174015
Spermatid associated
Tissue enriched
Detected in many
testis:
115.1
SSMEM1
ENSSSCG00000016562
ENSG00000165120
Serine rich single-pass membrane protein 1
Tissue enriched
Detected in some
testis:
49.2
STKLD1
ENSSSCG00000031407
ENSG00000198870
Serine/threonine kinase like domain containing 1
Tissue enriched
Detected in many
testis:
35.6
STPG4
ENSSSCG00000008432
ENSG00000239605
Sperm-tail PG-rich repeat containing 4
Tissue enriched
Detected in many
testis:
91.0
SULT1C3
ENSSSCG00000028691
ENSG00000196228
Sulfotransferase family 1C member 3
Tissue enriched
Detected in some
testis:
312.8
SYCE1L
ENSSSCG00000002700
ENSG00000205078
Synaptonemal complex central element protein 1 like
Group enriched
Detected in many
cornea:
7.9
testis:
28.5
TBC1D21
ENSSSCG00000001915
ENSG00000167139
TBC1 domain family member 21
Tissue enriched
Detected in some
testis:
36.9
TBXT
ENSSSCG00000036609
ENSG00000164458
T-box transcription factor T
Group enriched
Detected in some
mouth:
3.7
pituitary gland:
6.2
testis:
6.4
TCL1A
ENSSSCG00000002498
ENSG00000100721
T cell leukemia/lymphoma 1A
Tissue enhanced
Detected in some
adrenal gland:
3.5
lens:
4.7
testis:
12.6
TEKT5
ENSSSCG00000007904
ENSG00000153060
Tektin 5
Tissue enriched
Detected in single
testis:
35.7
TEPP
ENSSSCG00000002809
ENSG00000159648
Testis, prostate and placenta-expressed protein
Tissue enriched
Detected in some
testis:
48.8
TEX33
ENSSSCG00000000132
ENSG00000185264
Testis expressed 33
Tissue enriched
Detected in some
testis:
85.0
TEX35
ENSSSCG00000031220
ENSG00000240021
Testis expressed 35
Tissue enriched
Detected in some
testis:
211.8
TEX52
ENSSSCG00000000740
ENSG00000283297
Testis expressed 52
Group enriched
Detected in some
fallopian tube:
9.0
testis:
31.3
THEGL
ENSSSCG00000032353
ENSG00000249693
Theg spermatid protein like
Tissue enriched
Detected in some
testis:
57.5
TMEM239
ENSSSCG00000007169
ENSG00000198326
Transmembrane protein 239
Tissue enriched
Detected in some
testis:
108.8
TNP1
ENSSSCG00000016179
ENSG00000118245
Spermatid nuclear transition protein 1
Tissue enriched
Detected in single
testis:
414.6
TNP2
ENSSSCG00000027300
ENSG00000178279
Transition protein 2
Tissue enriched
Detected in single
testis:
302.7
TPPP2
ENSSSCG00000021950
ENSG00000179636
Tubulin polymerization promoting protein family member 2
Tissue enriched
Detected in some
testis:
169.0
TRIM17
ENSSSCG00000014000
ENSG00000162931
Tripartite motif containing 17
Tissue enriched
Detected in some
testis:
50.6
TRIM42
ENSSSCG00000011668
ENSG00000155890
Tripartite motif containing 42
Tissue enriched
Detected in some
testis:
48.4
TSSK3
ENSSSCG00000023968
ENSG00000162526
Testis-specific serine/threonine-protein kinase 3
Tissue enriched
Detected in some
testis:
45.3
TTLL13P
ENSSSCG00000035202
ENSG00000213471
Tubulin tyrosine ligase like 13, pseudogene
Tissue enriched
Detected in some
testis:
34.5
UBE3B
ENSSSCG00000009933
ENSG00000151148
Ubiquitin protein ligase E3B
Low tissue specificity
Detected in all
UBL4B
ENSSSCG00000028425
ENSG00000186150
Ubiquitin like 4B
Tissue enriched
Detected in some
testis:
85.7
UBQLN3
ENSSSCG00000014691
ENSG00000175520
Ubiquilin 3
Tissue enriched
Detected in single
testis:
106.1
ZAN
ENSSSCG00000007674
ENSG00000146839
Zonadhesin precursor
Group enriched
Detected in some
epididymis:
14.3
testis:
43.0
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