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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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2003 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ANKRD17
ENSSSCG00000024592
ENSG00000132466
Ankyrin repeat domain-containing protein 17
Low tissue specificity
Detected in all
ANKRD28
ENSSSCG00000011194
ENSG00000206560
Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A
Tissue enhanced
Detected in all
male glands:
55.5
ANKRD29
ENSSSCG00000003708
ENSG00000154065
Ankyrin repeat domain 29
Low tissue specificity
Detected in all
ANKRD46
ENSSSCG00000006065
ENSG00000186106
Ankyrin repeat domain-containing protein 46
Low tissue specificity
Detected in all
ANXA7
ENSSSCG00000010299
ENSG00000138279
Annexin A7
Low tissue specificity
Detected in all
AP1B1
ENSSSCG00000009978
ENSG00000100280
Adaptor related protein complex 1 beta 1 subunit
Low tissue specificity
Detected in all
AP1G1
ENSSSCG00000002740
ENSG00000166747
Adaptor related protein complex 1 gamma 1 subunit
Low tissue specificity
Detected in all
AP2M1
ENSSSCG00000024437
ENSG00000161203
AP-2 complex subunit mu
Low tissue specificity
Detected in all
AP3S1
ENSSSCG00000037595
ENSG00000177879
Adaptor related protein complex 3 sigma 1 subunit
Low tissue specificity
Detected in all
AP3S2
ENSSSCG00000030174
ENSG00000157823
AP-3 complex subunit sigma-2
Tissue enhanced
Detected in all
lens:
67.4
AP4S1
ENSSSCG00000001972
ENSG00000100478
AP-4 complex subunit sigma-1
Low tissue specificity
Detected in all
AP5M1
ENSSSCG00000005065
ENSG00000053770
Adaptor related protein complex 5 mu 1 subunit
Low tissue specificity
Detected in all
APELA
ENSSSCG00000031750
ENSG00000248329
Apelin receptor early endogenous ligand
Tissue enhanced
Detected in many
brain:
45.9
kidney:
46.6
API5
ENSSSCG00000013285
ENSG00000166181
Apoptosis inhibitor 5
Low tissue specificity
Detected in all
APMAP
ENSSSCG00000036286
ENSG00000101474
Adipocyte plasma membrane associated protein
Low tissue specificity
Detected in all
APP
ENSSSCG00000012022
ENSG00000142192
Amyloid-beta A4 protein N-APP Soluble APP-alpha Soluble APP-beta C99 Amyloid-beta protein 42 amyloid-beta protein 40 C83 P3(42) P3(40) C80 Gamma-secretase C-terminal fragment 59 Gamma-secretase C-terminal fragment 57 Gamma-secretase C-terminal fragment 50 C31
Low tissue specificity
Detected in all
APPBP2
ENSSSCG00000017678
ENSG00000062725
Amyloid beta precursor protein binding protein 2
Low tissue specificity
Detected in all
APPL1
ENSSSCG00000032357
ENSG00000157500
DCC-interacting protein 13-alpha
Low tissue specificity
Detected in all
APTX
ENSSSCG00000011001
ENSG00000137074
Aprataxin
Low tissue specificity
Detected in all
AQR
ENSSSCG00000004802
ENSG00000021776
Aquarius intron-binding spliceosomal factor
Low tissue specificity
Detected in all
ARCN1
ENSSSCG00000030053
ENSG00000095139
Archain 1
Tissue enhanced
Detected in all
male glands:
114.8
ARF4
ENSSSCG00000031791
ENSG00000168374
ADP ribosylation factor 4
Tissue enhanced
Detected in all
male glands:
78.3
ARG2
ENSSSCG00000002294
ENSG00000081181
Arginase 2
Low tissue specificity
Detected in all
ARHGAP5
ENSSSCG00000001966
ENSG00000100852
Rho GTPase activating protein 5
Low tissue specificity
Detected in all
ARIH1
ENSSSCG00000023188
ENSG00000166233
Ariadne RBR E3 ubiquitin protein ligase 1
Low tissue specificity
Detected in all
ARL1
ENSSSCG00000000870
ENSG00000120805
ADP ribosylation factor like GTPase 1
Tissue enhanced
Detected in all
male glands:
77.0
ARL14EP
ENSSSCG00000039889
ENSG00000152219
ADP ribosylation factor like GTPase 14 effector protein
Low tissue specificity
Detected in all
ARL5A
ENSSSCG00000031541
ENSG00000162980
ADP ribosylation factor like GTPase 5A
Low tissue specificity
Detected in all
ARL5B
ENSSSCG00000031456
ENSG00000165997
ADP ribosylation factor like GTPase 5B
Low tissue specificity
Detected in all
ARL6IP5
ENSSSCG00000033154
ENSG00000144746
PRA1 family protein 3
Low tissue specificity
Detected in all
ARL8B
ENSSSCG00000011535
ENSG00000134108
ADP-ribosylation factor-like protein 8B
Low tissue specificity
Detected in all
ARMC1
ENSSSCG00000006220
ENSG00000104442
Armadillo repeat-containing protein 1
Low tissue specificity
Detected in all
ARMC10
ENSSSCG00000028444
ENSG00000170632
Armadillo repeat-containing protein 10
Tissue enhanced
Detected in all
male glands:
71.9
ARMC6
ENSSSCG00000013927
ENSG00000105676
Armadillo repeat-containing protein 6 isoform 1
Low tissue specificity
Detected in all
ARMCX3
ENSSSCG00000040281
ENSG00000102401
Armadillo repeat containing, X-linked 3
Low tissue specificity
Detected in all
ARMT1
ENSSSCG00000004088
ENSG00000146476
Protein-glutamate O-methyltransferase
Tissue enhanced
Detected in all
lens:
29.5
ARNTL2
ENSSSCG00000000551
ENSG00000029153
Aryl hydrocarbon receptor nuclear translocator like 2
Tissue enriched
Detected in many
lens:
77.3
ARPC2
ENSSSCG00000016185
ENSG00000163466
Actin-related protein 2/3 complex subunit 2
Low tissue specificity
Detected in all
ARPC3
ENSSSCG00000009821
ENSG00000111229
Actin-related protein 2/3 complex subunit 3
Low tissue specificity
Detected in all
ARPC4
ENSSSCG00000011552
ENSG00000241553
Actin-related protein 2/3 complex subunit 4
Low tissue specificity
Detected in all
ARPC5L
ENSSSCG00000005596
ENSG00000136950
Actin-related protein 2/3 complex subunit 5-like protein
Low tissue specificity
Detected in all
ARV1
ENSSSCG00000010179
ENSG00000173409
Protein ARV1
Tissue enhanced
Detected in all
brain:
33.1
ASCC1
ENSSSCG00000023130
ENSG00000138303
Activating signal cointegrator 1 complex subunit 1 isoform 1
Low tissue specificity
Detected in all
ASF1A
ENSSSCG00000004247
ENSG00000111875
Anti-silencing function 1A histone chaperone
Low tissue specificity
Detected in all
ASH1L
ENSSSCG00000006508
ENSG00000116539
ASH1 like histone lysine methyltransferase
Low tissue specificity
Detected in all
ASH2L
ENSSSCG00000021898
ENSG00000129691
Set1/Ash2 histone methyltransferase complex subunit ASH2
Low tissue specificity
Detected in all
ASNS
ENSSSCG00000015340
ENSG00000070669
Asparagine synthetase
Low tissue specificity
Detected in all
ASNSD1
ENSSSCG00000016041
ENSG00000138381
Asparagine synthetase domain containing 1
Low tissue specificity
Detected in all
ATAD1
ENSSSCG00000010438
ENSG00000138138
ATPase family, AAA domain containing 1
Low tissue specificity
Detected in all
ATE1
ENSSSCG00000010699
ENSG00000107669
Arginyltransferase 1
Low tissue specificity
Detected in all
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