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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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910 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RGS7BP
ENSSSCG00000033581
ENSG00000186479
Regulator of G-protein signaling 7-binding protein
Tissue enhanced
Detected in some
brain:
34.7
retina:
9.5
RGS8
ENSSSCG00000039986
ENSG00000135824
Regulator of G protein signaling 8
Group enriched
Detected in some
brain:
32.8
heart:
17.8
pineal gland:
11.6
retina:
18.0
RHCE
ENSSSCG00000026791
ENSG00000188672
Blood group Rh(CE) polypeptide
Group enriched
Detected in some
brain:
5.6
dura mater:
16.4
RIMBP2
ENSSSCG00000009748
ENSG00000060709
RIMS binding protein 2
Tissue enhanced
Detected in many
brain:
22.5
liver:
17.7
pituitary gland:
17.7
retina:
14.6
RIMS3
ENSSSCG00000039245
ENSG00000117016
Regulating synaptic membrane exocytosis 3
Tissue enhanced
Detected in many
brain:
23.2
retina:
12.7
RIMS4
ENSSSCG00000021453
ENSG00000101098
Regulating synaptic membrane exocytosis 4
Tissue enriched
Detected in some
brain:
22.7
RIPPLY2
ENSSSCG00000004451
ENSG00000203877
Ripply transcriptional repressor 2
Group enriched
Detected in some
brain:
31.9
cartilage:
12.3
pineal gland:
28.7
pituitary gland:
16.9
RNF157
ENSSSCG00000017186
ENSG00000141576
Ring finger protein 157
Tissue enhanced
Detected in all
brain:
38.2
stomach:
40.8
RNF208
ENSSSCG00000005858
ENSG00000212864
Ring finger protein 208
Tissue enriched
Detected in many
brain:
28.7
RNF8
ENSSSCG00000001578
ENSG00000112130
Ring finger protein 8
Low tissue specificity
Detected in all
ROBO2
ENSSSCG00000012002
ENSG00000185008
Roundabout guidance receptor 2
Tissue enhanced
Detected in many
brain:
27.0
retina:
23.6
RORB
ENSSSCG00000005268
ENSG00000198963
RAR related orphan receptor B
Tissue enhanced
Detected in some
brain:
22.7
pineal gland:
29.5
pituitary gland:
17.1
retina:
66.5
RPH3A
ENSSSCG00000009883
ENSG00000089169
Rabphilin 3A
Group enriched
Detected in some
brain:
52.3
retina:
16.8
RPRM
ENSSSCG00000037225
ENSG00000177519
Reprimo, TP53 dependent G2 arrest mediator homolog
Group enriched
Detected in many
brain:
38.8
ductus deferens:
116.1
RPS6KL1
ENSSSCG00000002375
ENSG00000198208
Ribosomal protein S6 kinase like 1
Tissue enhanced
Detected in many
brain:
15.1
retina:
14.4
RTN1
ENSSSCG00000025013
ENSG00000139970
Reticulon-1 isoform 2
Tissue enhanced
Detected in some
brain:
52.6
pineal gland:
20.2
retina:
11.8
RTN2
ENSSSCG00000036870
ENSG00000125744
Reticulon-2
Tissue enhanced
Detected in all
retina:
27.6
skeletal muscle:
79.7
RTP1
ENSSSCG00000037108
ENSG00000175077
Receptor transporter protein 1
Group enriched
Detected in some
brain:
5.9
heart:
3.7
liver:
10.7
RUNDC3A
ENSSSCG00000017359
ENSG00000108309
RUN domain containing 3A
Tissue enriched
Detected in some
brain:
60.2
RXFP3
ENSSSCG00000032797
ENSG00000182631
Relaxin/insulin like family peptide receptor 3
Tissue enhanced
Detected in some
brain:
9.6
endometrium:
4.4
pineal gland:
4.7
salivary gland:
6.0
SAMD14
ENSSSCG00000017585
ENSG00000167100
Sterile alpha motif domain containing 14
Tissue enhanced
Detected in many
brain:
24.7
SCG2
ENSSSCG00000023032
ENSG00000171951
Secretogranin-2 precursor
Group enriched
Detected in some
pineal gland:
170.0
pituitary gland:
272.9
SCG3
ENSSSCG00000004630
ENSG00000104112
Secretogranin III
Group enriched
Detected in many
brain:
28.7
pineal gland:
32.1
pituitary gland:
24.0
retina:
17.0
SCG5
ENSSSCG00000004807
ENSG00000166922
Neuroendocrine protein 7B2 precursor
Tissue enhanced
Detected in many
brain:
32.2
pineal gland:
43.6
pituitary gland:
90.2
SCN1A
ENSSSCG00000024204
ENSG00000144285
Sodium voltage-gated channel alpha subunit 1
Tissue enriched
Detected in some
brain:
46.9
SCN2A
ENSSSCG00000015905
ENSG00000136531
Sodium voltage-gated channel alpha subunit 2
Tissue enriched
Detected in some
brain:
44.5
SCN2B
ENSSSCG00000021651
ENSG00000149575
Sodium voltage-gated channel beta subunit 2
Tissue enriched
Detected in some
brain:
47.5
SCN3A
ENSSSCG00000015911
ENSG00000153253
Sodium voltage-gated channel alpha subunit 3
Group enriched
Detected in some
brain:
19.6
pineal gland:
22.3
pituitary gland:
21.3
SCN3B
ENSSSCG00000024299
ENSG00000166257
Sodium voltage-gated channel beta subunit 3
Tissue enriched
Detected in some
brain:
78.9
SCN4B
ENSSSCG00000029199
ENSG00000177098
Sodium voltage-gated channel beta subunit 4
Tissue enhanced
Detected in many
brain:
61.8
skeletal muscle:
37.7
SCN8A
ENSSSCG00000000228
ENSG00000196876
Sodium voltage-gated channel alpha subunit 8
Group enriched
Detected in many
brain:
34.5
lens:
11.0
pineal gland:
11.7
retina:
16.6
SCRT1
ENSSSCG00000025879
ENSG00000261678
Scratch family transcriptional repressor 1
Group enriched
Detected in some
brain:
33.1
retina:
13.4
SCRT2
ENSSSCG00000039028
ENSG00000215397
Scratch family transcriptional repressor 2
Group enriched
Detected in some
brain:
7.4
retina:
12.8
SEPT3
ENSSSCG00000000040
ENSG00000100167
Septin 3
Tissue enhanced
Detected in all
brain:
67.7
testis:
47.2
SERPINI1
ENSSSCG00000011740
ENSG00000163536
Serpin family I member 1
Tissue enhanced
Detected in many
brain:
26.2
pineal gland:
10.7
pituitary gland:
15.5
SEZ6
ENSSSCG00000035445
ENSG00000063015
Seizure related 6 homolog
Group enriched
Detected in some
brain:
30.0
pineal gland:
83.8
retina:
26.5
SEZ6L
ENSSSCG00000009958
ENSG00000100095
Seizure related 6 homolog like
Tissue enhanced
Detected in many
adrenal gland:
14.2
brain:
47.1
SEZ6L2
ENSSSCG00000029186
ENSG00000174938
Seizure related 6 homolog like 2
Group enriched
Detected in some
brain:
44.5
pineal gland:
23.6
pituitary gland:
36.4
retina:
14.2
SFXN5
ENSSSCG00000008307
ENSG00000144040
Sideroflexin 5
Tissue enriched
Detected in many
brain:
39.0
SGIP1
ENSSSCG00000025243
ENSG00000118473
SH3 domain GRB2 like endophilin interacting protein 1
Tissue enhanced
Detected in many
brain:
34.6
pineal gland:
21.7
retina:
74.1
SGSM1
ENSSSCG00000009951
ENSG00000167037
Small G protein signaling modulator 1
Tissue enhanced
Detected in all
brain:
33.8
stomach:
33.6
SGTB
ENSSSCG00000040603
ENSG00000197860
Small glutamine rich tetratricopeptide repeat containing beta
Tissue enhanced
Detected in all
brain:
37.2
SH3GL2
ENSSSCG00000005177
ENSG00000107295
SH3 domain containing GRB2 like 2, endophilin A1
Tissue enhanced
Detected in many
brain:
55.7
pineal gland:
47.4
retina:
29.4
SHISA9
ENSSSCG00000032878
ENSG00000237515
Shisa family member 9
Tissue enriched
Detected in some
brain:
51.9
SIAH3
ENSSSCG00000038733
ENSG00000215475
Siah E3 ubiquitin protein ligase family member 3
Tissue enhanced
Detected in some
brain:
9.8
pineal gland:
23.7
SLC12A5
ENSSSCG00000007437
ENSG00000124140
Solute carrier family 12 member 5
Group enriched
Detected in some
brain:
42.1
pineal gland:
24.2
retina:
32.8
SLC13A5
ENSSSCG00000017888
ENSG00000141485
Solute carrier family 13 member 5
Tissue enhanced
Detected in many
endometrium:
33.3
liver:
24.3
SLC17A6
ENSSSCG00000013343
ENSG00000091664
Solute carrier family 17 member 6
Tissue enriched
Detected in some
brain:
31.0
SLC1A1
ENSSSCG00000005222
ENSG00000106688
Excitatory amino acid transporter 3
Tissue enhanced
Detected in many
brain:
18.7
kidney:
15.9
small intestine:
30.8
SLC1A2
ENSSSCG00000013296
ENSG00000110436
Solute carrier family 1 member 2
Tissue enriched
Detected in some
brain:
89.6
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