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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Digestive system diseases
Endocrine and metabolic diseases
Immune system diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
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Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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850 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000006388
ENSG00000132716,ENSG00000258465
DDB1- and CUL4-associated factor 8
Low tissue specificity
Detected in all
na
ENSSSCG00000007527
ENSG00000124205
Endothelin-3
Tissue enhanced
Detected in all
cornea:
48.1
na
ENSSSCG00000007692
ENSG00000170027
Tissue enhanced
Detected in all
brain:
70.0
na
ENSSSCG00000007743
ENSG00000106153
Low tissue specificity
Detected in all
na
ENSSSCG00000008309
ENSG00000116096
Low tissue specificity
Detected in all
na
ENSSSCG00000009138
ENSG00000205403,ENSG00000285330
Tissue enhanced
Detected in many
liver:
109.6
small intestine:
45.6
na
ENSSSCG00000009172
ENSG00000138814
Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform
Group enriched
Detected in all
brain:
93.4
cartilage:
51.5
na
ENSSSCG00000009221
ENSG00000152591
Dentin sialophosphoprotein preproprotein
Tissue enhanced
Detected in all
liver:
30.9
na
ENSSSCG00000009770
ENSG00000111361
Low tissue specificity
Detected in all
na
ENSSSCG00000010034
ENSG00000100150
Tissue enhanced
Detected in all
liver:
34.3
na
ENSSSCG00000010278
ENSG00000107736
Tissue enhanced
Detected in many
urinary bladder:
27.7
na
ENSSSCG00000010331
ENSG00000122359
Low tissue specificity
Detected in all
na
ENSSSCG00000010497
ENSG00000138185
Ectonucleoside triphosphate diphosphohydrolase 1
Low tissue specificity
Detected in all
na
ENSSSCG00000010559
ENSG00000186862
Tissue enhanced
Detected in many
vagus nerve:
47.3
na
ENSSSCG00000010703
ENSG00000166033
Tissue enhanced
Detected in all
lens:
171.5
na
ENSSSCG00000010893
ENSG00000000971
Complement factor H precursor
Tissue enhanced
Detected in many
liver:
146.5
synovial tissue:
73.4
na
ENSSSCG00000012103
ENSG00000101850
Tissue enhanced
Detected in many
bone marrow:
8.3
na
ENSSSCG00000012125
ENSG00000046651
Low tissue specificity
Detected in all
na
ENSSSCG00000012235
ENSG00000156313
Tissue enhanced
Detected in all
fallopian tube:
40.7
na
ENSSSCG00000012984
ENSG00000142186
Low tissue specificity
Detected in all
na
ENSSSCG00000013928
ENSG00000130283,ENSG00000223802
Tissue enhanced
Detected in many
brain:
43.4
vagus nerve:
18.8
na
ENSSSCG00000014097
ENSG00000113231,ENSG00000284762
Tissue enhanced
Detected in many
brain:
29.5
thyroid gland:
26.6
na
ENSSSCG00000014343
ENSG00000015479,ENSG00000280987
Low tissue specificity
Detected in all
na
ENSSSCG00000014387
ENSG00000131504
Low tissue specificity
Detected in all
na
ENSSSCG00000014805
ENSG00000184154,ENSG00000284844
Tissue enhanced
Detected in some
retina:
7.9
na
ENSSSCG00000015826
ENSG00000147471
Low tissue specificity
Detected in all
na
ENSSSCG00000017176
ENSG00000129673
Tissue enhanced
Detected in many
male glands:
12.4
pineal gland:
35.9
salivary gland:
12.4
na
ENSSSCG00000020777
ENSG00000100106
Low tissue specificity
Detected in all
na
ENSSSCG00000022345
ENSG00000128656
Tissue enhanced
Detected in many
brain:
141.2
pineal gland:
37.6
na
ENSSSCG00000022358
ENSG00000157869
Ras-related protein Rab-28
Low tissue specificity
Detected in all
na
ENSSSCG00000024914
ENSG00000243649
Complement factor B precursor
Tissue enhanced
Detected in many
liver:
148.2
small intestine:
99.1
na
ENSSSCG00000025187
ENSG00000171202
Transmembrane protein 126A
Low tissue specificity
Detected in all
na
ENSSSCG00000025281
ENSG00000170540,ENSG00000260342
ADP-ribosylation factor-like protein 6-interacting protein 1
Low tissue specificity
Detected in all
na
ENSSSCG00000027098
ENSG00000162065,ENSG00000260272
Low tissue specificity
Detected in all
na
ENSSSCG00000027115
ENSG00000122728,ENSG00000147133
Low tissue specificity
Detected in all
na
ENSSSCG00000027676
ENSG00000101361
Nucleolar protein 56
Low tissue specificity
Detected in all
na
ENSSSCG00000027970
ENSG00000167371
Tissue enriched
Detected in many
brain:
53.2
na
ENSSSCG00000028713
ENSG00000183638
Tissue enriched
Detected in some
retina:
41.6
na
ENSSSCG00000029523
ENSG00000102076,ENSG00000166160,ENSG00000268221,ENSG00000269433
Medium-wave-sensitive opsin
Tissue enriched
Detected in some
retina:
133.6
na
ENSSSCG00000030183
ENSG00000108433
Low tissue specificity
Detected in all
na
ENSSSCG00000031121
ENSG00000198860
Low tissue specificity
Detected in all
na
ENSSSCG00000031420
ENSG00000130489,ENSG00000284194
SCO cytochrome oxidase deficient homolog 2 precursor
Low tissue specificity
Detected in all
na
ENSSSCG00000033493
ENSG00000148408
Tissue enhanced
Detected in some
brain:
18.0
pituitary gland:
6.8
vagus nerve:
8.7
na
ENSSSCG00000033720
ENSG00000203485
Tissue enhanced
Detected in many
stomach:
65.5
na
ENSSSCG00000033864
ENSG00000130294
Tissue enhanced
Detected in many
brain:
35.7
lens:
31.3
vagus nerve:
28.5
na
ENSSSCG00000033966
ENSG00000108518
Low tissue specificity
Detected in many
na
ENSSSCG00000034266
ENSG00000196557
Tissue enhanced
Detected in many
ductus deferens:
33.3
smooth muscle:
41.2
na
ENSSSCG00000035037
ENSG00000142178
Tissue enhanced
Detected in many
cartilage:
66.5
mesothelial tissue:
63.5
na
ENSSSCG00000035497
ENSG00000122550
Low tissue specificity
Detected in all
na
ENSSSCG00000035718
ENSG00000129673
Tissue enriched
Detected in some
pineal gland:
83.8
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