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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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80 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000033299
ENSG00000196924
Tissue enhanced
Detected in many
smooth muscle:
320.4
NEUROG3
ENSSSCG00000034488
ENSG00000122859
Neurogenin 3
Group enriched
Detected in some
large intestine:
5.9
pineal gland:
6.7
small intestine:
7.2
stomach:
7.1
NR1H4
ENSSSCG00000000875
ENSG00000012504
Bile acid receptor
Tissue enhanced
Detected in some
adrenal gland:
22.5
liver:
68.0
small intestine:
44.1
thyroid gland:
35.6
PAX9
ENSSSCG00000001942
ENSG00000198807
Paired box 9
Group enriched
Detected in some
esophagus:
41.4
male glands:
77.7
mouth:
25.3
salivary gland:
21.1
upper respiratory system:
33.8
PDX1
ENSSSCG00000035817
ENSG00000139515
Pancreatic and duodenal homeobox 1
Tissue enhanced
Detected in some
gallbladder:
6.9
small intestine:
29.1
stomach:
9.1
PLBD1
ENSSSCG00000026724
ENSG00000070019
Phospholipase B-like 1 precursor
Tissue enriched
Detected in all
ovary:
103.9
PNPLA3
ENSSSCG00000027266
ENSG00000100344
Patatin-like phospholipase domain-containing protein 3
Tissue enriched
Detected in some
lens:
35.6
PRSS2
ENSSSCG00000016478
ENSG00000010438,ENSG00000204983,ENSG00000275896
Trypsin-2 precursor
Group enriched
Detected in some
adipose tissue:
6.6
lymphoid tissue:
6.0
mesothelial tissue:
3.2
PTH1R
ENSSSCG00000011326
ENSG00000160801
Parathyroid hormone/parathyroid hormone-related peptide receptor
Tissue enhanced
Detected in many
cartilage:
47.4
kidney:
49.9
REST
ENSSSCG00000023357
ENSG00000084093
RE1 silencing transcription factor
Low tissue specificity
Detected in all
SGO1
ENSSSCG00000011207
ENSG00000129810
Shugoshin 1
Tissue enhanced
Detected in many
lymphoid tissue:
23.9
SH3BP2
ENSSSCG00000022004
ENSG00000087266
SH3 domain binding protein 2
Low tissue specificity
Detected in many
SHH
ENSSSCG00000016416
ENSG00000164690
Sonic hedgehog protein preproprotein
Group enriched
Detected in some
epididymis:
13.3
stomach:
31.7
urinary bladder:
33.0
SLA-DQB1
ENSSSCG00000001457
ENSG00000179344,ENSG00000232629
SLA class II histocompatibility antigen, DQ haplotype C beta chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
129.0
SLC10A2
ENSSSCG00000026317
ENSG00000125255
Ileal sodium/bile acid cotransporter
Tissue enriched
Detected in some
small intestine:
70.7
SLC24A4
ENSSSCG00000002450
ENSG00000140090
Solute carrier family 24 member 4
Tissue enriched
Detected in some
choroid plexus:
71.8
SLC26A3
ENSSSCG00000021813
ENSG00000091138
Chloride anion exchanger
Group enriched
Detected in some
gallbladder:
26.5
large intestine:
96.4
male glands:
74.9
small intestine:
26.5
SLC9A3
ENSSSCG00000039413
ENSG00000066230
Solute carrier family 9 member A3
Group enriched
Detected in some
gallbladder:
88.1
kidney:
22.6
large intestine:
50.9
male glands:
73.6
stomach:
40.8
SLCO2A1
ENSSSCG00000011641
ENSG00000174640
Solute carrier organic anion transporter family member 2A1
Low tissue specificity
Detected in many
SMAD4
ENSSSCG00000004524
ENSG00000141646
Mothers against decapentaplegic homolog 4
Low tissue specificity
Detected in all
SMOC2
ENSSSCG00000004013
ENSG00000112562
SPARC related modular calcium binding 2
Tissue enhanced
Detected in many
cervix:
64.8
ductus deferens:
56.4
endometrium:
41.5
SOS1
ENSSSCG00000008478
ENSG00000115904
SOS Ras/Rac guanine nucleotide exchange factor 1
Low tissue specificity
Detected in all
SP110
ENSSSCG00000016261
ENSG00000135899
SP110 nuclear body protein
Tissue enhanced
Detected in many
lymphoid tissue:
50.7
SPINK1
ENSSSCG00000034511
ENSG00000164266
Serine peptidase inhibitor, Kazal type 1
Tissue enriched
Detected in some
small intestine:
72.4
SPINT2
ENSSSCG00000002954
ENSG00000167642
Serine peptidase inhibitor, Kunitz type 2
Tissue enhanced
Detected in many
male glands:
146.6
STK11
ENSSSCG00000013429
ENSG00000118046
Serine/threonine kinase 11
Low tissue specificity
Detected in all
UTP4
ENSSSCG00000028638
ENSG00000141076
UTP4, small subunit processome component
Low tissue specificity
Detected in all
WDR72
ENSSSCG00000004615
ENSG00000166415
WD repeat domain 72
Tissue enhanced
Detected in some
choroid plexus:
20.5
kidney:
41.9
WNT10A
ENSSSCG00000026958
ENSG00000135925
Wnt family member 10A
Tissue enhanced
Detected in many
cornea:
23.5
mesothelial tissue:
17.2
mouth:
10.7
vagus nerve:
12.5
WNT10B
ENSSSCG00000000182
ENSG00000169884
Protein Wnt-10b precursor
Low tissue specificity
Detected in all
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