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Chromosome
1
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External id
Variability
Variable
Not variable
Tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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263 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
AK7
ENSSSCG00000002504
ENSG00000140057
Adenylate kinase 7
Tissue enhanced
Detected in some
choroid plexus:
32.5
fallopian tube:
49.5
upper respiratory system:
26.9
ALS2CR12
ENSSSCG00000016105
ENSG00000155749
Amyotrophic lateral sclerosis 2 chromosome region 12
Tissue enhanced
Detected in some
choroid plexus:
30.1
fallopian tube:
56.5
lung:
18.3
upper respiratory system:
22.7
AMCF-II
ENSSSCG00000008957
ENSG00000124875,ENSG00000163735
Alveolar macrophage chemotactic factor 2
Tissue enhanced
Detected in some
esophagus:
12.1
ovary:
12.9
upper respiratory system:
7.0
ANKFN1
ENSSSCG00000017609
ENSG00000153930
Ankyrin repeat and fibronectin type III domain containing 1
Tissue enhanced
Detected in some
brain:
13.5
fallopian tube:
32.7
lung:
17.0
upper respiratory system:
20.1
APOBEC1
ENSSSCG00000000668
ENSG00000111701
Apolipoprotein B mRNA editing enzyme catalytic subunit 1
Tissue enhanced
Detected in some
cornea:
11.9
large intestine:
22.0
small intestine:
8.7
upper respiratory system:
19.9
APOBEC4
ENSSSCG00000015561
ENSG00000173627
Apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4
Tissue enhanced
Detected in some
fallopian tube:
31.9
lung:
10.4
testis:
8.9
upper respiratory system:
19.0
ATP13A5
ENSSSCG00000026260
ENSG00000187527
ATPase 13A5
Tissue enhanced
Detected in some
breast:
17.3
esophagus:
14.2
salivary gland:
32.5
upper respiratory system:
24.4
BPIFB3
ENSSSCG00000026137
ENSG00000186190
BPI fold containing family B member 3
Tissue enhanced
Detected in some
esophagus:
8.8
salivary gland:
3.0
upper respiratory system:
6.6
BTG4
ENSSSCG00000015020
ENSG00000137707
BTG anti-proliferation factor 4
Tissue enhanced
Detected in some
choroid plexus:
7.3
fallopian tube:
15.4
lung:
6.3
lymphoid tissue:
6.2
upper respiratory system:
8.6
C11orf88
ENSSSCG00000015021
ENSG00000183644
Chromosome 11 open reading frame 88
Tissue enhanced
Detected in some
choroid plexus:
19.9
fallopian tube:
35.8
lung:
16.1
testis:
25.1
upper respiratory system:
28.2
C1orf189
ENSSSCG00000006555
ENSG00000163263
Chromosome 1 open reading frame 189
Tissue enhanced
Detected in some
fallopian tube:
41.3
testis:
76.4
upper respiratory system:
63.5
C20orf85
ENSSSCG00000007510
ENSG00000124237
Uncharacterized protein C20orf85 homolog
Tissue enhanced
Detected in some
fallopian tube:
103.3
lung:
54.0
upper respiratory system:
95.4
C2orf50
ENSSSCG00000034536
ENSG00000150873
Chromosome 2 open reading frame 50
Tissue enhanced
Detected in some
fallopian tube:
2.8
lung:
1.2
upper respiratory system:
2.8
C6orf118
ENSSSCG00000004028
ENSG00000112539
Chromosome 6 open reading frame 118
Tissue enhanced
Detected in some
choroid plexus:
20.7
fallopian tube:
37.1
testis:
23.9
upper respiratory system:
17.7
CAPN14
ENSSSCG00000024781
ENSG00000214711
Calpain 14
Tissue enhanced
Detected in some
cornea:
6.3
ductus deferens:
3.2
upper respiratory system:
11.3
CCDC153
ENSSSCG00000015109
ENSG00000248712
Coiled-coil domain containing 153
Tissue enhanced
Detected in some
brain:
7.0
fallopian tube:
16.2
lung:
6.3
pituitary gland:
8.4
upper respiratory system:
12.2
CCDC17
ENSSSCG00000021448
ENSG00000159588
Coiled-coil domain containing 17
Tissue enhanced
Detected in some
fallopian tube:
24.9
lung:
20.0
testis:
21.4
upper respiratory system:
25.7
CCDC40
ENSSSCG00000017158
ENSG00000141519
Coiled-coil domain containing 40
Tissue enhanced
Detected in some
fallopian tube:
26.3
lung:
12.8
testis:
16.3
upper respiratory system:
19.8
CCNA1
ENSSSCG00000009354
ENSG00000133101
Cyclin A1
Tissue enhanced
Detected in some
fallopian tube:
28.1
testis:
31.3
upper respiratory system:
27.0
CCR6
ENSSSCG00000024562
ENSG00000112486
C-C motif chemokine receptor 6
Tissue enhanced
Detected in some
lymphoid tissue:
33.3
stomach:
12.3
upper respiratory system:
8.9
CD69
ENSSSCG00000000653
ENSG00000110848
Early activation antigen CD69
Tissue enhanced
Detected in some
large intestine:
11.4
lung:
15.8
lymphoid tissue:
28.4
upper respiratory system:
14.3
CD79B
ENSSSCG00000017283
ENSG00000007312
B-cell antigen receptor complex-associated protein beta chain precursor
Tissue enhanced
Detected in some
lymphoid tissue:
49.6
pituitary gland:
14.0
upper respiratory system:
33.2
CFAP161
ENSSSCG00000001786
ENSG00000156206
Cilia- and flagella-associated protein 161
Tissue enhanced
Detected in some
brain:
11.3
choroid plexus:
17.1
fallopian tube:
26.6
lung:
11.6
upper respiratory system:
19.7
CFAP52
ENSSSCG00000017994
ENSG00000166596
Cilia and flagella associated protein 52
Tissue enhanced
Detected in some
brain:
14.0
fallopian tube:
30.1
testis:
30.3
upper respiratory system:
21.2
CFAP57
ENSSSCG00000023904
ENSG00000243710
Cilia and flagella associated protein 57
Tissue enhanced
Detected in some
fallopian tube:
21.1
lymphoid tissue:
21.4
testis:
15.6
upper respiratory system:
14.8
CFAP61
ENSSSCG00000038858
ENSG00000089101
Cilia and flagella associated protein 61
Tissue enhanced
Detected in some
choroid plexus:
16.5
fallopian tube:
25.0
testis:
41.2
upper respiratory system:
18.9
CFAP73
ENSSSCG00000009875
ENSG00000186710
Cilia and flagella associated protein 73
Tissue enhanced
Detected in some
choroid plexus:
10.2
fallopian tube:
27.9
lung:
12.1
upper respiratory system:
22.7
CLCA1
ENSSSCG00000006933
ENSG00000016490
Chloride channel accessory 1
Tissue enhanced
Detected in some
esophagus:
245.3
male glands:
91.9
upper respiratory system:
255.5
CNGA2
ENSSSCG00000012753
ENSG00000183862
Cyclic nucleotide gated channel alpha 2
Tissue enhanced
Detected in some
lung:
2.5
pituitary gland:
6.9
upper respiratory system:
2.4
DMRT2
ENSSSCG00000005233
ENSG00000173253
Doublesex and mab-3 related transcription factor 2
Tissue enhanced
Detected in some
adipose tissue:
28.1
kidney:
17.9
mesothelial tissue:
9.1
upper respiratory system:
9.8
DMRTA2
ENSSSCG00000030552
ENSG00000142700
DMRT like family A2
Tissue enhanced
Detected in some
choroid plexus:
15.3
cornea:
52.8
lens:
12.0
pituitary gland:
15.2
upper respiratory system:
13.8
DNAH7
ENSSSCG00000032814
ENSG00000118997
Dynein axonemal heavy chain 7
Tissue enhanced
Detected in some
epididymis:
16.1
fallopian tube:
27.7
testis:
17.7
upper respiratory system:
16.9
DNAI2
ENSSSCG00000024357
ENSG00000171595
Dynein axonemal intermediate chain 2
Tissue enhanced
Detected in some
choroid plexus:
13.5
fallopian tube:
27.7
lung:
12.1
testis:
25.2
upper respiratory system:
19.2
DNAJB13
ENSSSCG00000014832
ENSG00000187726
DnaJ homolog subfamily B member 13
Tissue enhanced
Detected in some
choroid plexus:
28.8
fallopian tube:
13.1
testis:
37.3
upper respiratory system:
18.2
DRC7
ENSSSCG00000002817
ENSG00000159625
Dynein regulatory complex subunit 7
Tissue enhanced
Detected in some
fallopian tube:
28.6
lung:
19.0
testis:
21.3
upper respiratory system:
26.9
ECT2L
ENSSSCG00000004147
ENSG00000203734
Epithelial cell transforming 2 like
Tissue enhanced
Detected in some
choroid plexus:
9.6
fallopian tube:
31.4
lung:
8.4
upper respiratory system:
18.1
EDN2
ENSSSCG00000037856
ENSG00000127129
Endothelin 2
Tissue enhanced
Detected in some
mouth:
9.2
ovary:
22.8
stomach:
14.4
upper respiratory system:
15.7
EFCAB12
ENSSSCG00000011587
ENSG00000172771
EF-hand calcium-binding domain-containing protein 12
Tissue enhanced
Detected in some
choroid plexus:
28.6
fallopian tube:
28.4
lung:
15.9
upper respiratory system:
30.7
FCRLA
ENSSSCG00000030246
ENSG00000132185
Fc receptor like A
Tissue enhanced
Detected in some
lymphoid tissue:
34.8
small intestine:
12.0
upper respiratory system:
19.8
FEZF1
ENSSSCG00000031221
ENSG00000128610
FEZ family zinc finger 1
Tissue enhanced
Detected in some
brain:
10.4
pituitary gland:
3.4
upper respiratory system:
15.2
FGF20
ENSSSCG00000006980
ENSG00000078579
Fibroblast growth factor 20
Tissue enhanced
Detected in some
brain:
8.6
pituitary gland:
1.8
stomach:
1.7
upper respiratory system:
2.2
FGF3
ENSSSCG00000012872
ENSG00000186895
Fibroblast growth factor 3
Tissue enhanced
Detected in some
lymphoid tissue:
4.0
small intestine:
1.7
upper respiratory system:
3.2
FGFBP1
ENSSSCG00000008741
ENSG00000137440
Fibroblast growth factor binding protein 1
Tissue enhanced
Detected in some
cornea:
29.7
large intestine:
32.9
mouth:
16.6
skin:
26.2
upper respiratory system:
25.5
FOXJ1
ENSSSCG00000017187
ENSG00000129654
Forkhead box J1
Tissue enhanced
Detected in some
fallopian tube:
107.2
upper respiratory system:
81.5
GDF7
ENSSSCG00000028931
ENSG00000143869
Growth differentiation factor 7
Tissue enhanced
Detected in some
cervix:
34.2
ductus deferens:
10.1
male glands:
25.3
upper respiratory system:
10.6
GPR25
ENSSSCG00000037641
ENSG00000170128
G protein-coupled receptor 25
Tissue enhanced
Detected in some
lung:
12.1
stomach:
29.2
upper respiratory system:
11.9
GPRL15
ENSSSCG00000024634
ENSG00000188373
Protein GPR15L
Tissue enhanced
Detected in some
large intestine:
118.4
lymphoid tissue:
26.5
salivary gland:
27.7
upper respiratory system:
37.9
GSC
ENSSSCG00000002490
ENSG00000133937
Goosecoid homeobox
Tissue enhanced
Detected in some
adipose tissue:
13.4
aorta:
8.0
mesothelial tissue:
14.0
mouth:
8.2
upper respiratory system:
14.1
HYDIN
ENSSSCG00000040973
ENSG00000157423
HYDIN, axonemal central pair apparatus protein
Tissue enhanced
Detected in some
choroid plexus:
18.5
fallopian tube:
61.3
lung:
21.1
upper respiratory system:
31.1
ICOS
ENSSSCG00000025042
ENSG00000163600
Tissue enhanced
Detected in some
large intestine:
7.4
lymphoid tissue:
24.6
stomach:
7.7
upper respiratory system:
7.3
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