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Chromosome
1
2
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5
6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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242 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
AICDA
ENSSSCG00000000667
ENSG00000111732
Activation induced cytidine deaminase
Tissue enhanced
Detected in many
lymphoid tissue:
22.1
upper respiratory system:
18.7
ALX1
ENSSSCG00000036744
ENSG00000180318
ALX homeobox 1
Tissue enhanced
Detected in many
kidney:
16.7
upper respiratory system:
8.8
ALX4
ENSSSCG00000040329
ENSG00000052850
ALX homeobox 4
Tissue enhanced
Detected in many
brain:
18.4
dura mater:
15.6
penis:
14.9
upper respiratory system:
13.5
ANKLE1
ENSSSCG00000037099
ENSG00000160117
Ankyrin repeat and LEM domain containing 1
Tissue enhanced
Detected in many
dura mater:
11.3
lymphoid tissue:
12.9
upper respiratory system:
10.5
AQP3
ENSSSCG00000040513
ENSG00000165272
Aquaporin-3
Tissue enhanced
Detected in many
kidney:
52.7
mouth:
41.9
upper respiratory system:
73.3
AQP5
ENSSSCG00000000211
ENSG00000161798
Aquaporin-5
Tissue enhanced
Detected in many
cornea:
35.3
male glands:
97.9
salivary gland:
42.2
upper respiratory system:
40.6
ARFGEF3
ENSSSCG00000022968
ENSG00000112379
ARFGEF family member 3
Tissue enhanced
Detected in many
brain:
39.3
salivary gland:
39.4
upper respiratory system:
31.8
ARMC4
ENSSSCG00000011069
ENSG00000169126
Armadillo repeat containing 4
Tissue enhanced
Detected in many
choroid plexus:
24.0
fallopian tube:
53.8
upper respiratory system:
36.3
ASCL3
ENSSSCG00000014572
ENSG00000176009
Achaete-scute family bHLH transcription factor 3
Tissue enhanced
Detected in many
salivary gland:
11.9
upper respiratory system:
21.0
ASF1B
ENSSSCG00000013772
ENSG00000105011
Histone chaperone ASF1B
Tissue enhanced
Detected in many
lymphoid tissue:
26.6
testis:
22.3
upper respiratory system:
26.7
ATP2A3
ENSSSCG00000017874
ENSG00000074370
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3
Tissue enhanced
Detected in many
salivary gland:
69.7
stomach:
96.5
upper respiratory system:
48.2
B3GNT4
ENSSSCG00000009798
ENSG00000176383
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4
Tissue enhanced
Detected in many
fallopian tube:
37.4
lung:
26.9
upper respiratory system:
15.5
BHLHA15
ENSSSCG00000038489
ENSG00000180535
Basic helix-loop-helix family member a15
Tissue enhanced
Detected in many
male glands:
59.2
salivary gland:
80.4
upper respiratory system:
37.6
BLK
ENSSSCG00000027568
ENSG00000136573
BLK proto-oncogene, Src family tyrosine kinase
Tissue enhanced
Detected in many
lymphoid tissue:
32.5
stomach:
14.4
upper respiratory system:
14.3
BTK
ENSSSCG00000026742
ENSG00000010671
Tyrosine-protein kinase BTK
Tissue enhanced
Detected in many
lymphoid tissue:
33.5
upper respiratory system:
17.9
C11orf53
ENSSSCG00000015018
ENSG00000150750
Chromosome 11 open reading frame 53
Tissue enhanced
Detected in many
stomach:
10.8
upper respiratory system:
18.7
C5orf49
ENSSSCG00000017098
ENSG00000215217
Chromosome 5 open reading frame 49
Tissue enhanced
Detected in many
brain:
21.5
testis:
26.3
upper respiratory system:
33.7
C6orf58
ENSSSCG00000004212
ENSG00000184530
Chromosome 6 open reading frame 58
Tissue enhanced
Detected in many
esophagus:
34.2
upper respiratory system:
15.1
CCDC113
ENSSSCG00000002803
ENSG00000103021
Coiled-coil domain-containing protein 113
Tissue enhanced
Detected in many
fallopian tube:
19.5
testis:
12.7
upper respiratory system:
11.7
CCDC129
ENSSSCG00000016671
ENSG00000180347
Coiled-coil domain containing 129
Tissue enhanced
Detected in many
epididymis:
18.5
salivary gland:
34.8
upper respiratory system:
27.9
CCDC3
ENSSSCG00000011110
ENSG00000151468
Coiled-coil domain containing 3
Tissue enhanced
Detected in many
mesothelial tissue:
62.2
upper respiratory system:
64.7
CCDC96
ENSSSCG00000028085
ENSG00000173013
Coiled-coil domain containing 96
Tissue enhanced
Detected in many
testis:
37.9
upper respiratory system:
13.8
CCL28
ENSSSCG00000016871
ENSG00000151882
C-C motif chemokine 28 precursor
Tissue enhanced
Detected in many
endometrium:
49.2
male glands:
37.9
salivary gland:
37.3
upper respiratory system:
29.0
CCNO
ENSSSCG00000026849
ENSG00000152669
Cyclin O
Tissue enhanced
Detected in many
lung:
7.3
upper respiratory system:
20.5
CD22
ENSSSCG00000002893
ENSG00000012124
CD22 molecule
Tissue enhanced
Detected in many
lymphoid tissue:
58.5
stomach:
23.7
upper respiratory system:
23.2
CD48
ENSSSCG00000006379
ENSG00000117091
CD48 antigen precursor
Tissue enhanced
Detected in many
lung:
23.1
lymphoid tissue:
39.4
upper respiratory system:
20.0
CDCA8
ENSSSCG00000032909
ENSG00000134690
Cell division cycle associated 8
Tissue enhanced
Detected in many
lymphoid tissue:
20.0
testis:
11.2
upper respiratory system:
12.6
CFAP54
ENSSSCG00000033574
ENSG00000188596
Cilia and flagella associated protein 54
Tissue enhanced
Detected in many
choroid plexus:
31.6
fallopian tube:
62.8
upper respiratory system:
24.1
CITED4
ENSSSCG00000033952
ENSG00000179862
Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4
Tissue enhanced
Detected in many
male glands:
43.1
salivary gland:
72.2
upper respiratory system:
46.4
CLDN4
ENSSSCG00000007718
ENSG00000189143
Claudin-4
Tissue enhanced
Detected in many
upper respiratory system:
62.5
CMAH
ENSSSCG00000001099
Cytidine monophosphate-N-acetylneuraminic acid hydroxylase
Tissue enhanced
Detected in many
esophagus:
62.7
salivary gland:
55.2
upper respiratory system:
109.7
CORO1A
ENSSSCG00000038055
ENSG00000102879
Coronin 1A
Tissue enhanced
Detected in many
lymphoid tissue:
109.8
upper respiratory system:
54.6
CROCC2
ENSSSCG00000036261
ENSG00000226321
Ciliary rootlet coiled-coil, rootletin family member 2
Tissue enhanced
Detected in many
adipose tissue:
27.6
fallopian tube:
21.7
lung:
13.6
upper respiratory system:
16.7
CT83
ENSSSCG00000021942
ENSG00000204019
Cancer/testis antigen 83
Tissue enhanced
Detected in many
esophagus:
20.4
large intestine:
15.4
salivary gland:
19.7
testis:
12.8
upper respiratory system:
19.4
CXCL8
ENSSSCG00000008953
ENSG00000169429
Interleukin-8
Tissue enhanced
Detected in many
large intestine:
26.1
lung:
25.1
small intestine:
17.2
upper respiratory system:
25.1
CYP2B22
ENSSSCG00000003006
ENSG00000197408
Cytochrome P450 2B22 precursor
Tissue enhanced
Detected in many
esophagus:
30.3
lung:
33.2
upper respiratory system:
92.8
CYP4B1
ENSSSCG00000003894
ENSG00000142973
Cytochrome P450 family 4 subfamily B member 1
Tissue enhanced
Detected in many
adipose tissue:
47.5
lung:
64.9
salivary gland:
50.4
upper respiratory system:
47.5
DAPP1
ENSSSCG00000039327
ENSG00000070190
Dual adaptor of phosphotyrosine and 3-phosphoinositides 1
Tissue enhanced
Detected in many
lymphoid tissue:
41.9
upper respiratory system:
23.0
DHRS9
ENSSSCG00000015930
ENSG00000073737
Dehydrogenase/reductase 9
Tissue enhanced
Detected in many
large intestine:
10.0
lymphoid tissue:
13.6
upper respiratory system:
31.8
DNAH11
ENSSSCG00000015379
ENSG00000105877
Dynein axonemal heavy chain 11
Tissue enhanced
Detected in many
choroid plexus:
16.0
fallopian tube:
31.5
lung:
27.2
upper respiratory system:
22.7
DNALI1
ENSSSCG00000039034
ENSG00000163879
Dynein axonemal light intermediate chain 1
Tissue enhanced
Detected in many
choroid plexus:
20.5
fallopian tube:
22.6
testis:
12.2
upper respiratory system:
17.2
DPEP2
ENSSSCG00000021105
ENSG00000167261
Dipeptidase 2
Tissue enhanced
Detected in many
fallopian tube:
37.2
lung:
14.5
upper respiratory system:
24.9
DRC1
ENSSSCG00000008568
ENSG00000157856
Dynein regulatory complex subunit 1
Tissue enhanced
Detected in many
fallopian tube:
38.9
testis:
22.9
upper respiratory system:
25.4
DUOXA2
ENSSSCG00000004676
ENSG00000140274
Dual oxidase maturation factor 2
Tissue enhanced
Detected in many
large intestine:
30.1
stomach:
34.1
thyroid gland:
45.4
upper respiratory system:
28.0
DYNLRB2
ENSSSCG00000031421
ENSG00000168589
Dynein light chain roadblock-type 2
Tissue enhanced
Detected in many
choroid plexus:
44.0
fallopian tube:
41.6
upper respiratory system:
44.9
E2F7
ENSSSCG00000000950
ENSG00000165891
E2F transcription factor 7
Tissue enhanced
Detected in many
brain:
13.0
lymphoid tissue:
16.4
upper respiratory system:
15.9
EAF2
ENSSSCG00000011880
ENSG00000145088
ELL associated factor 2
Tissue enhanced
Detected in many
lymphoid tissue:
40.8
small intestine:
24.3
upper respiratory system:
25.6
EFHC1
ENSSSCG00000002620
ENSG00000096093
EF-hand domain containing 1
Tissue enhanced
Detected in many
choroid plexus:
26.5
fallopian tube:
34.6
testis:
36.3
upper respiratory system:
37.3
EGFL6
ENSSSCG00000012121
ENSG00000198759
EGF like domain multiple 6
Tissue enhanced
Detected in many
cornea:
16.4
dura mater:
21.7
pituitary gland:
25.4
upper respiratory system:
14.7
EHF
ENSSSCG00000013300
ENSG00000135373
ETS homologous factor
Tissue enhanced
Detected in many
male glands:
88.9
salivary gland:
88.8
upper respiratory system:
80.8
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