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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Cancers
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Subclass
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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30 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ADCY8
ENSSSCG00000031717
ENSG00000155897
Adenylate cyclase 8
Tissue enhanced
Detected in all
upper respiratory system:
30.9
ADORA2B
ENSSSCG00000035051
ENSG00000170425
Adenosine A2b receptor
Tissue enhanced
Detected in all
upper respiratory system:
25.5
AK8
ENSSSCG00000039188
ENSG00000165695
Adenylate kinase 8
Tissue enhanced
Detected in all
fallopian tube:
28.4
testis:
33.9
upper respiratory system:
32.2
ATP12A
ENSSSCG00000022638
ENSG00000075673
ATPase H+/K+ transporting non-gastric alpha2 subunit
Tissue enhanced
Detected in all
upper respiratory system:
30.7
C9orf116
ENSSSCG00000036914
ENSG00000160345
Chromosome 9 open reading frame 116
Tissue enhanced
Detected in all
fallopian tube:
30.6
upper respiratory system:
30.1
CFAP126
ENSSSCG00000023957
ENSG00000188931
Cilia and flagella associated protein 126
Tissue enhanced
Detected in all
choroid plexus:
63.1
fallopian tube:
75.7
testis:
53.2
upper respiratory system:
71.6
CFAP157
ENSSSCG00000005618
ENSG00000160401
Cilia and flagella associated protein 157
Tissue enhanced
Detected in all
lung:
24.6
upper respiratory system:
25.9
CFAP77
ENSSSCG00000005727
ENSG00000188523
Cilia and flagella associated protein 77
Tissue enhanced
Detected in all
fallopian tube:
26.7
upper respiratory system:
19.9
CYP24A1
ENSSSCG00000007486
ENSG00000019186
1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial
Tissue enhanced
Detected in all
upper respiratory system:
29.3
DCDC2B
ENSSSCG00000022014
ENSG00000222046
Doublecortin domain containing 2B
Tissue enhanced
Detected in all
fallopian tube:
39.8
upper respiratory system:
35.3
DYDC2
ENSSSCG00000010339
ENSG00000133665
DPY30 domain containing 2
Tissue enhanced
Detected in all
fallopian tube:
26.6
upper respiratory system:
26.8
F3
ENSSSCG00000022447
ENSG00000117525
Tissue factor
Tissue enhanced
Detected in all
cornea:
64.5
ovary:
111.0
upper respiratory system:
53.4
IDO1
ENSSSCG00000007007
ENSG00000131203
Indoleamine 2,3-dioxygenase 1
Tissue enhanced
Detected in all
upper respiratory system:
46.9
LBP
ENSSSCG00000028758
ENSG00000129988
Lipopolysaccharide-binding protein precursor
Tissue enhanced
Detected in all
liver:
65.0
upper respiratory system:
30.6
na
ENSSSCG00000005638
Neutrophil gelatinase-associated lipocalin precursor
Tissue enhanced
Detected in all
cornea:
148.2
dura mater:
60.0
upper respiratory system:
120.1
na
ENSSSCG00000009239
Tissue enhanced
Detected in all
large intestine:
46.4
stomach:
41.7
upper respiratory system:
49.9
na
ENSSSCG00000031526
Tissue enhanced
Detected in all
lymphoid tissue:
47.9
upper respiratory system:
30.9
na
ENSSSCG00000033065
ENSG00000276180
Histone H4
Tissue enhanced
Detected in all
lymphoid tissue:
68.9
upper respiratory system:
69.4
na
ENSSSCG00000034136
ENSG00000277157
Histone H4
Tissue enhanced
Detected in all
lymphoid tissue:
127.2
upper respiratory system:
99.5
na
ENSSSCG00000034595
Tissue enhanced
Detected in all
lymphoid tissue:
225.2
upper respiratory system:
75.4
na
ENSSSCG00000035261
ENSG00000203811
Sus scrofa histone cluster 2, H3-like (LOC100156741), mRNA.
Tissue enhanced
Detected in all
lymphoid tissue:
197.2
upper respiratory system:
127.6
na
ENSSSCG00000036093
Histone H4
Tissue enhanced
Detected in all
lymphoid tissue:
187.8
upper respiratory system:
129.5
na
ENSSSCG00000036562
ENSG00000168148
Tissue enhanced
Detected in all
lymphoid tissue:
92.2
upper respiratory system:
53.3
na
ENSSSCG00000039146
Tissue enhanced
Detected in all
upper respiratory system:
50.2
SAXO2
ENSSSCG00000031963
ENSG00000188659
Stabilizer of axonemal microtubules 2
Tissue enhanced
Detected in all
fallopian tube:
25.3
upper respiratory system:
26.2
SLC11A2
ENSSSCG00000034039
ENSG00000110911
Natural resistance-associated macrophage protein 2
Tissue enhanced
Detected in all
upper respiratory system:
51.1
TAC4
ENSSSCG00000038057
ENSG00000176358
Tachykinin-4 precursor
Tissue enhanced
Detected in all
esophagus:
29.1
salivary gland:
42.8
upper respiratory system:
25.8
TMEM212
ENSSSCG00000011751
ENSG00000186329
Transmembrane protein 212
Tissue enhanced
Detected in all
fallopian tube:
30.6
upper respiratory system:
28.8
TSPAN19
ENSSSCG00000040399
ENSG00000231738
Tetraspanin 19
Tissue enhanced
Detected in all
upper respiratory system:
21.7
TTC21A
ENSSSCG00000011263
ENSG00000168026
Tetratricopeptide repeat domain 21A
Tissue enhanced
Detected in all
fallopian tube:
31.1
upper respiratory system:
24.7
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