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Gene name
Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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78 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000036477
Group enriched
Detected in some
brain:
2.7
upper respiratory system:
2.5
SP8
ENSSSCG00000031078
ENSG00000164651
Sp8 transcription factor
Group enriched
Detected in some
brain:
27.7
male glands:
31.4
upper respiratory system:
19.0
LDLRAD1
ENSSSCG00000027641
ENSG00000203985
Low density lipoprotein receptor class A domain containing 1
Group enriched
Detected in some
fallopian tube:
45.2
lung:
17.7
upper respiratory system:
66.3
na
ENSSSCG00000033610
Group enriched
Detected in some
esophagus:
87.0
male glands:
118.0
upper respiratory system:
309.0
na
ENSSSCG00000032639
Group enriched
Detected in some
upper respiratory system:
2.3
vagus nerve:
2.1
BPIFB1
ENSSSCG00000007261
ENSG00000125999
BPI fold-containing family B member 1 precursor
Group enriched
Detected in some
stomach:
169.9
upper respiratory system:
641.2
na
ENSSSCG00000033796
Group enriched
Detected in some
brain:
2.4
dura mater:
2.0
large intestine:
1.5
liver:
2.2
upper respiratory system:
1.4
na
ENSSSCG00000033679
Group enriched
Detected in some
testis:
7.6
upper respiratory system:
3.0
na
ENSSSCG00000037157
Group enriched
Detected in some
adipose tissue:
2.6
brain:
1.6
choroid plexus:
1.7
upper respiratory system:
1.2
na
ENSSSCG00000032136
Group enriched
Detected in some
brain:
2.1
liver:
2.1
lymphoid tissue:
1.2
upper respiratory system:
1.0
na
ENSSSCG00000039645
Group enriched
Detected in some
brain:
1.9
kidney:
1.2
lymphoid tissue:
1.8
upper respiratory system:
1.8
FOXG1
ENSSSCG00000033761
ENSG00000176165
Forkhead box G1
Group enriched
Detected in some
brain:
43.5
testis:
17.4
upper respiratory system:
10.9
LY6D
ENSSSCG00000037524
ENSG00000167656
Lymphocyte antigen 6 family member D
Group enriched
Detected in some
mouth:
60.2
skin:
33.4
upper respiratory system:
27.3
urinary bladder:
41.6
COL10A1
ENSSSCG00000004436
ENSG00000123500
Collagen alpha-1(X) chain precursor
Group enriched
Detected in some
cartilage:
24.1
upper respiratory system:
90.6
na
ENSSSCG00000033960
Group enriched
Detected in some
large intestine:
1.4
thyroid gland:
1.6
upper respiratory system:
1.4
na
ENSSSCG00000040493
Group enriched
Detected in some
brain:
1.4
upper respiratory system:
1.4
GPX2
ENSSSCG00000002279
ENSG00000176153
Glutathione peroxidase 2
Group enriched
Detected in some
large intestine:
226.7
upper respiratory system:
96.9
na
ENSSSCG00000036559
Group enriched
Detected in some
brain:
5.4
kidney:
2.4
upper respiratory system:
2.0
LCN1
ENSSSCG00000035964
ENSG00000160349
Lipocalin-1 precursor
Group enriched
Detected in some
esophagus:
521.6
upper respiratory system:
1195.4
na
ENSSSCG00000036784
Group enriched
Detected in some
brain:
8.7
lung:
3.4
upper respiratory system:
11.5
CHI3L1
ENSSSCG00000015476
ENSG00000133048
Chitinase-3-like protein 1 precursor
Group enriched
Detected in some
cartilage:
58.5
lung:
39.6
synovial tissue:
21.1
upper respiratory system:
18.7
na
ENSSSCG00000000659
Group enriched
Detected in some
liver:
16.2
upper respiratory system:
40.4
OR10J1
ENSSSCG00000024008
ENSG00000196184
Olfactory receptor family 10 subfamily J member 1
Group enriched
Detected in some
lymphoid tissue:
10.8
penis:
8.9
upper respiratory system:
2.8
CRISP3
ENSSSCG00000024347
ENSG00000096006
Cysteine rich secretory protein 3
Group enriched
Detected in some
male glands:
265.0
upper respiratory system:
115.5
FOXI2
ENSSSCG00000010752
ENSG00000186766
Forkhead box I2
Group enriched
Detected in some
mouth:
2.7
salivary gland:
10.9
upper respiratory system:
6.9
na
ENSSSCG00000033646
Group enriched
Detected in some
dura mater:
1.7
large intestine:
1.0
lung:
3.6
small intestine:
3.1
upper respiratory system:
2.8
OLFM4
ENSSSCG00000009444
ENSG00000102837
Olfactomedin 4
Group enriched
Detected in some
large intestine:
266.2
stomach:
97.8
upper respiratory system:
106.9
OR10J5
ENSSSCG00000033778
ENSG00000184155
Olfactory receptor family 10 subfamily J member 5
Group enriched
Detected in some
lymphoid tissue:
19.8
penis:
10.6
upper respiratory system:
5.4
PPP1R32
ENSSSCG00000013081
ENSG00000162148
Protein phosphatase 1 regulatory subunit 32
Group enriched
Detected in some
testis:
85.6
upper respiratory system:
26.3
RTP2
ENSSSCG00000011809
ENSG00000198471
Receptor transporter protein 2
Group enriched
Detected in some
brain:
2.8
upper respiratory system:
1.0
BPIFB4
ENSSSCG00000029295
ENSG00000186191
BPI fold containing family B member 4
Group enriched
Detected in some
testis:
9.4
upper respiratory system:
11.7
IL19
ENSSSCG00000015653
ENSG00000142224
Interleukin 19
Group enriched
Detected in some
lymphoid tissue:
5.1
upper respiratory system:
2.0
MCIDAS
ENSSSCG00000036183
ENSG00000234602
Multicilin
Group enriched
Detected in some
lung:
12.4
upper respiratory system:
25.6
na
ENSSSCG00000010783
Group enriched
Detected in some
lymphoid tissue:
3.3
upper respiratory system:
1.5
na
ENSSSCG00000032503
Group enriched
Detected in some
epididymis:
14.4
heart:
14.6
lens:
19.1
lymphoid tissue:
5.6
upper respiratory system:
6.5
na
ENSSSCG00000035033
ENSG00000159763
Group enriched
Detected in some
salivary gland:
297.8
upper respiratory system:
391.2
TTLL10
ENSSSCG00000003336
ENSG00000162571
Tubulin tyrosine ligase like 10
Group enriched
Detected in some
fallopian tube:
45.3
lung:
46.8
testis:
35.8
upper respiratory system:
12.7
AADACL2
ENSSSCG00000033781
ENSG00000197953
Arylacetamide deacetylase like 2
Group enriched
Detected in some
cartilage:
3.8
mouth:
11.8
skin:
8.1
testis:
4.2
upper respiratory system:
3.3
C1orf87
ENSSSCG00000003823
ENSG00000162598
Chromosome 1 open reading frame 87
Group enriched
Detected in some
fallopian tube:
46.7
lung:
18.8
upper respiratory system:
18.5
CAPN13
ENSSSCG00000020986
ENSG00000162949
Calpain 13
Group enriched
Detected in some
stomach:
44.5
upper respiratory system:
61.9
IFN-DELTA-7
ENSSSCG00000031022
Interferon delta 7 precursor
Group enriched
Detected in some
choroid plexus:
15.1
fallopian tube:
7.0
lung:
5.8
upper respiratory system:
4.2
IL1R2
ENSSSCG00000028331
ENSG00000115590
Interleukin-1 receptor type 2 precursor
Group enriched
Detected in some
bone marrow:
28.9
skin:
31.0
testis:
9.3
upper respiratory system:
8.9
KREMEN2
ENSSSCG00000035052
ENSG00000131650
Kringle containing transmembrane protein 2
Group enriched
Detected in some
epididymis:
7.5
lymphoid tissue:
15.9
skin:
13.0
upper respiratory system:
4.0
na
ENSSSCG00000009102
Group enriched
Detected in some
endometrium:
2.8
testis:
1.3
upper respiratory system:
2.8
na
ENSSSCG00000017814
ENSG00000187624
Group enriched
Detected in some
fallopian tube:
53.9
lung:
19.5
testis:
44.8
upper respiratory system:
51.4
na
ENSSSCG00000021855
Group enriched
Detected in some
fallopian tube:
34.1
skin:
12.1
testis:
17.4
upper respiratory system:
11.9
na
ENSSSCG00000023156
ENSG00000284308
Uncharacterized protein C2orf81 homolog
Group enriched
Detected in some
fallopian tube:
12.1
testis:
42.1
upper respiratory system:
16.3
na
ENSSSCG00000034976
ENSG00000135220
Group enriched
Detected in some
liver:
31.0
upper respiratory system:
38.7
na
ENSSSCG00000037006
ENSG00000102313
Group enriched
Detected in some
male glands:
7.2
upper respiratory system:
3.7
na
ENSSSCG00000038683
Group enriched
Detected in some
fallopian tube:
21.4
skin:
9.4
testis:
13.4
upper respiratory system:
7.3
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