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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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127 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SPERT
ENSSSCG00000009417
ENSG00000174015
Spermatid associated
Tissue enriched
Detected in many
testis:
115.1
GGN
ENSSSCG00000002957
ENSG00000179168
Gametogenetin
Tissue enriched
Detected in many
testis:
106.0
na
ENSSSCG00000021473
Tissue enriched
Detected in many
testis:
141.6
na
ENSSSCG00000006842
Tissue enriched
Detected in many
testis:
69.5
na
ENSSSCG00000032125
Tissue enriched
Detected in many
testis:
123.7
CALR3
ENSSSCG00000013858
ENSG00000269058
Calreticulin 3
Tissue enriched
Detected in many
testis:
82.8
BRDT
ENSSSCG00000023654
ENSG00000137948
Bromodomain testis associated
Tissue enriched
Detected in many
testis:
97.4
STPG4
ENSSSCG00000008432
ENSG00000239605
Sperm-tail PG-rich repeat containing 4
Tissue enriched
Detected in many
testis:
91.0
SPATA45
ENSSSCG00000015591
ENSG00000185523
Spermatogenesis associated 45
Tissue enriched
Detected in many
testis:
77.2
SHCBP1L
ENSSSCG00000026983
ENSG00000157060
SHC binding and spindle associated 1 like
Tissue enriched
Detected in many
testis:
77.2
na
ENSSSCG00000028784
Tissue enriched
Detected in many
testis:
84.7
IL4I1
ENSSSCG00000003192
ENSG00000104951
Interleukin 4 induced 1
Tissue enriched
Detected in many
testis:
91.7
na
ENSSSCG00000017808
Tissue enriched
Detected in many
testis:
122.2
na
ENSSSCG00000037471
ENSG00000165131
Tissue enriched
Detected in many
testis:
54.7
IZUMO4
ENSSSCG00000013455
ENSG00000099840
IZUMO family member 4
Tissue enriched
Detected in many
testis:
165.6
na
ENSSSCG00000002903
Tissue enriched
Detected in many
testis:
73.3
DHRS4
ENSSSCG00000002013
ENSG00000157326,ENSG00000187630
Dehydrogenase/reductase SDR family member 4
Tissue enriched
Detected in many
testis:
279.6
ANKRD35
ENSSSCG00000006688
ENSG00000198483
Ankyrin repeat domain 35
Tissue enriched
Detected in many
testis:
167.6
na
ENSSSCG00000016055
Tissue enriched
Detected in many
testis:
62.8
IQCF1
ENSSSCG00000029827
ENSG00000173389
IQ motif containing F1
Tissue enriched
Detected in many
testis:
75.6
na
ENSSSCG00000021258
ENSG00000164729,ENSG00000177710,ENSG00000236396,ENSG00000259224
Tissue enriched
Detected in many
testis:
57.3
na
ENSSSCG00000031818
Tissue enriched
Detected in many
testis:
83.9
TCTE3
ENSSSCG00000004009
ENSG00000184786
T-complex-associated-testis-expressed 3
Tissue enriched
Detected in many
testis:
50.5
na
ENSSSCG00000003052
ENSG00000131126
Tissue enriched
Detected in many
testis:
72.6
na
ENSSSCG00000010498
ENSG00000188649
Tissue enriched
Detected in many
testis:
45.5
na
ENSSSCG00000021676
ENSG00000187105
Tissue enriched
Detected in many
testis:
60.1
EFCAB9
ENSSSCG00000016995
ENSG00000214360
EF-hand calcium binding domain 9
Tissue enriched
Detected in many
testis:
35.2
FAM71E1
ENSSSCG00000003219
ENSG00000142530
Family with sequence similarity 71 member E1
Tissue enriched
Detected in many
testis:
106.7
TMEM247
ENSSSCG00000008442
ENSG00000284701
Transmembrane protein 247
Tissue enriched
Detected in many
testis:
34.8
AKAP3
ENSSSCG00000000720
ENSG00000111254
A-kinase anchor protein 3
Tissue enriched
Detected in many
testis:
78.4
C17orf98
ENSSSCG00000037753
ENSG00000275489
Chromosome 17 open reading frame 98
Tissue enriched
Detected in many
testis:
41.1
SEPT12
ENSSSCG00000007933
ENSG00000140623
Septin-12
Tissue enriched
Detected in many
testis:
63.0
FAM71B
ENSSSCG00000017057
ENSG00000170613
Family with sequence similarity 71 member B
Tissue enriched
Detected in many
testis:
77.7
GRK4
ENSSSCG00000008694
ENSG00000125388
G protein-coupled receptor kinase 4
Tissue enriched
Detected in many
testis:
73.1
CCDC87
ENSSSCG00000012933
ENSG00000182791
Coiled-coil domain containing 87
Tissue enriched
Detected in many
testis:
37.6
GPR161
ENSSSCG00000006302
ENSG00000143147
G protein-coupled receptor 161
Tissue enriched
Detected in many
testis:
57.7
na
ENSSSCG00000016332
Tissue enriched
Detected in many
testis:
53.8
na
ENSSSCG00000039736
ENSG00000284526
Tissue enriched
Detected in many
testis:
193.4
TEX14
ENSSSCG00000017645
ENSG00000121101
Testis expressed 14, intercellular bridge forming factor
Tissue enriched
Detected in many
testis:
41.3
C11orf42
ENSSSCG00000014634
ENSG00000180878
Chromosome 11 open reading frame 42
Tissue enriched
Detected in many
testis:
79.1
CCDC110
ENSSSCG00000015795
ENSG00000168491
Coiled-coil domain containing 110
Tissue enriched
Detected in many
testis:
65.6
GPR135
ENSSSCG00000032928
ENSG00000181619
G protein-coupled receptor 135
Tissue enriched
Detected in many
testis:
37.1
KIF25
ENSSSCG00000004016
ENSG00000125337
Kinesin family member 25
Tissue enriched
Detected in many
testis:
40.1
LRRC72
ENSSSCG00000015361
ENSG00000205858
Leucine rich repeat containing 72
Tissue enriched
Detected in many
testis:
43.7
na
ENSSSCG00000001083
ENSG00000112273
Tissue enriched
Detected in many
testis:
67.0
C11orf91
ENSSSCG00000013310
ENSG00000205177
Chromosome 11 open reading frame 91
Tissue enriched
Detected in many
testis:
41.6
CDKL3
ENSSSCG00000014302
ENSG00000006837
Cyclin dependent kinase like 3
Tissue enriched
Detected in many
testis:
42.6
EFCAB5
ENSSSCG00000017794
ENSG00000176927
EF-hand calcium binding domain 5
Tissue enriched
Detected in many
testis:
33.5
na
ENSSSCG00000007001
Tissue enriched
Detected in many
testis:
92.8
na
ENSSSCG00000012714
ENSG00000203933
Tissue enriched
Detected in many
testis:
38.3
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