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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
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Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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1344 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
A2M
ENSSSCG00000000660
ENSG00000175899
Alpha-2-macroglobulin
Tissue enhanced
Detected in many
adrenal gland:
238.9
liver:
109.4
testis:
79.2
AADACL4
ENSSSCG00000003440
ENSG00000204518
Arylacetamide deacetylase like 4
Tissue enhanced
Detected in some
choroid plexus:
2.1
mouth:
1.9
testis:
3.6
AARD
ENSSSCG00000006013
ENSG00000205002
Alanine and arginine rich domain containing protein
Tissue enhanced
Detected in some
choroid plexus:
22.4
lymphoid tissue:
11.8
testis:
20.4
ABCA12
ENSSSCG00000034282
ENSG00000144452
ATP binding cassette subfamily A member 12
Tissue enhanced
Detected in some
epididymis:
8.7
large intestine:
17.5
skin:
26.0
testis:
6.2
ABHD4
ENSSSCG00000002051
ENSG00000100439
Abhydrolase domain containing 4
Tissue enhanced
Detected in all
testis:
61.8
ACE
ENSSSCG00000017296
ENSG00000159640
Angiotensin-converting enzyme isoform 1 precursor
Tissue enhanced
Detected in many
testis:
102.1
ACOT7
ENSSSCG00000003377
ENSG00000097021
Acyl-CoA thioesterase 7
Tissue enhanced
Detected in many
brain:
39.2
testis:
31.3
ACP4
ENSSSCG00000024736
ENSG00000142513
Acid phosphatase 4
Tissue enhanced
Detected in all
lens:
40.4
testis:
36.4
ACP7
ENSSSCG00000002971
ENSG00000183760
Acid phosphatase 7, tartrate resistant (putative)
Tissue enhanced
Detected in some
mouth:
2.9
skin:
12.1
testis:
5.2
ACSF2
ENSSSCG00000017566
ENSG00000167107
Acyl-CoA synthetase family member 2
Tissue enhanced
Detected in all
testis:
110.3
ACTL6B
ENSSSCG00000007670
ENSG00000077080
Actin like 6B
Tissue enhanced
Detected in some
brain:
12.7
liver:
11.1
pituitary gland:
8.3
testis:
5.6
ADIG
ENSSSCG00000007346
ENSG00000182035
Adipogenin
Tissue enhanced
Detected in many
adipose tissue:
67.8
bone marrow:
38.6
testis:
34.1
ADTRP
ENSSSCG00000001048
ENSG00000111863
Androgen dependent TFPI regulating protein
Tissue enhanced
Detected in some
large intestine:
14.1
liver:
43.4
testis:
18.6
AFAP1
ENSSSCG00000023907
ENSG00000196526
Actin filament-associated protein 1
Tissue enhanced
Detected in all
testis:
51.0
AGBL2
ENSSSCG00000040838
ENSG00000165923
ATP/GTP binding protein like 2
Tissue enhanced
Detected in all
testis:
50.5
AGBL3
ENSSSCG00000016529
ENSG00000146856
ATP/GTP binding protein like 3
Tissue enhanced
Detected in all
testis:
46.4
AIFM2
ENSSSCG00000010258
ENSG00000042286
Apoptosis inducing factor, mitochondria associated 2
Tissue enhanced
Detected in all
adipose tissue:
40.1
testis:
38.3
AK8
ENSSSCG00000039188
ENSG00000165695
Adenylate kinase 8
Tissue enhanced
Detected in all
fallopian tube:
28.4
testis:
33.9
upper respiratory system:
32.2
AKAP1
ENSSSCG00000034994
ENSG00000121057
A-kinase anchor protein 1, mitochondrial
Tissue enhanced
Detected in all
heart:
54.5
testis:
78.8
ALDH1A2
ENSSSCG00000025578
ENSG00000128918
Aldehyde dehydrogenase 1 family member A2
Tissue enhanced
Detected in many
adipose tissue:
44.6
testis:
38.1
ALK
ENSSSCG00000008533
ENSG00000171094
ALK receptor tyrosine kinase
Tissue enhanced
Detected in some
brain:
5.5
choroid plexus:
7.7
pituitary gland:
8.0
testis:
13.0
ALMS1
ENSSSCG00000037977
ENSG00000116127
ALMS1, centrosome and basal body associated protein
Tissue enhanced
Detected in all
testis:
85.4
ALOX5AP
ENSSSCG00000009330
ENSG00000132965
Arachidonate 5-lipoxygenase-activating protein precursor
Tissue enhanced
Detected in many
brain:
30.0
testis:
30.4
ANGEL1
ENSSSCG00000002390
ENSG00000013523
Angel homolog 1
Tissue enhanced
Detected in all
testis:
42.9
ANKAR
ENSSSCG00000016042
ENSG00000151687
Ankyrin and armadillo repeat containing
Tissue enhanced
Detected in many
choroid plexus:
11.1
testis:
16.5
ANKEF1
ENSSSCG00000007063
ENSG00000132623
Ankyrin repeat and EF-hand domain containing 1
Tissue enhanced
Detected in some
male glands:
18.0
testis:
35.6
ANKRD45
ENSSSCG00000015491
ENSG00000183831
Ankyrin repeat domain 45
Tissue enhanced
Detected in many
choroid plexus:
39.3
testis:
39.8
ANKRD53
ENSSSCG00000031976
ENSG00000144031
Ankyrin repeat domain 53
Tissue enhanced
Detected in many
adipose tissue:
11.9
kidney:
26.0
testis:
24.9
ANKRD61
ENSSSCG00000007593
ENSG00000157999
Ankyrin repeat domain 61
Tissue enhanced
Detected in all
testis:
24.9
ANKRD9
ENSSSCG00000039713
ENSG00000156381
Ankyrin repeat domain 9
Tissue enhanced
Detected in many
liver:
24.5
testis:
55.6
AP1M1
ENSSSCG00000013856
ENSG00000072958
AP-1 complex subunit mu-1
Tissue enhanced
Detected in all
testis:
85.0
AP2B1
ENSSSCG00000017712
ENSG00000006125
AP-2 complex subunit beta
Tissue enhanced
Detected in all
testis:
64.4
APOBEC4
ENSSSCG00000015561
ENSG00000173627
Apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4
Tissue enhanced
Detected in some
fallopian tube:
31.9
lung:
10.4
testis:
8.9
upper respiratory system:
19.0
AQP11
ENSSSCG00000014880
ENSG00000178301
Aquaporin-11
Tissue enhanced
Detected in all
testis:
37.0
ARHGAP20
ENSSSCG00000015015
ENSG00000137727
Rho GTPase activating protein 20
Tissue enhanced
Detected in many
pineal gland:
41.4
testis:
31.7
ARHGEF39
ENSSSCG00000005314
ENSG00000137135
Rho guanine nucleotide exchange factor 39
Tissue enhanced
Detected in many
lymphoid tissue:
33.4
testis:
37.3
ARID3A
ENSSSCG00000037642
ENSG00000116017
AT-rich interaction domain 3A
Tissue enhanced
Detected in all
testis:
40.3
ARID3C
ENSSSCG00000010971
ENSG00000205143
AT-rich interaction domain 3C
Tissue enhanced
Detected in many
testis:
33.8
ARL9
ENSSSCG00000008899
ENSG00000196503
ADP ribosylation factor like GTPase 9
Tissue enhanced
Detected in all
testis:
53.7
ARMC3
ENSSSCG00000011078
ENSG00000165309
Armadillo repeat containing 3
Tissue enhanced
Detected in all
testis:
27.4
ASB12
ENSSSCG00000032889
ENSG00000198881
Ankyrin repeat and SOCS box containing 12
Tissue enhanced
Detected in some
heart:
8.8
skeletal muscle:
43.3
testis:
12.5
ASF1B
ENSSSCG00000013772
ENSG00000105011
Histone chaperone ASF1B
Tissue enhanced
Detected in many
lymphoid tissue:
26.6
testis:
22.3
upper respiratory system:
26.7
ASRGL1
ENSSSCG00000013065
ENSG00000162174
Asparaginase like 1
Tissue enhanced
Detected in all
testis:
45.8
ASXL3
ENSSSCG00000003736
ENSG00000141431
Additional sex combs like 3, transcriptional regulator
Tissue enhanced
Detected in many
brain:
11.6
lens:
12.4
testis:
16.1
ATAD2
ENSSSCG00000005983
ENSG00000156802
ATPase family, AAA domain containing 2
Tissue enhanced
Detected in many
lymphoid tissue:
45.1
testis:
37.3
ATF7IP2
ENSSSCG00000020675
ENSG00000166669
Activating transcription factor 7 interacting protein 2
Tissue enhanced
Detected in many
retina:
18.2
testis:
43.5
ATRIP
ENSSSCG00000011359
ENSG00000164053
ATR interacting protein
Tissue enhanced
Detected in all
testis:
33.3
ATXN2L
ENSSSCG00000021845
ENSG00000168488
Ataxin 2 like
Tissue enhanced
Detected in all
testis:
137.6
AURKC
ENSSSCG00000034174
ENSG00000105146
Aurora kinase C
Tissue enhanced
Detected in all
testis:
36.7
BAAT
ENSSSCG00000035245
ENSG00000136881
Bile acid-CoA:amino acid N-acyltransferase
Tissue enhanced
Detected in some
fallopian tube:
3.1
testis:
7.5
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