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Chromosome
1
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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386 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
A2M
ENSSSCG00000000660
ENSG00000175899
Alpha-2-macroglobulin
Tissue enhanced
Detected in many
adrenal gland:
238.9
liver:
109.4
testis:
79.2
ACE
ENSSSCG00000017296
ENSG00000159640
Angiotensin-converting enzyme isoform 1 precursor
Tissue enhanced
Detected in many
testis:
102.1
ACOT7
ENSSSCG00000003377
ENSG00000097021
Acyl-CoA thioesterase 7
Tissue enhanced
Detected in many
brain:
39.2
testis:
31.3
ADIG
ENSSSCG00000007346
ENSG00000182035
Adipogenin
Tissue enhanced
Detected in many
adipose tissue:
67.8
bone marrow:
38.6
testis:
34.1
ALDH1A2
ENSSSCG00000025578
ENSG00000128918
Aldehyde dehydrogenase 1 family member A2
Tissue enhanced
Detected in many
adipose tissue:
44.6
testis:
38.1
ALOX5AP
ENSSSCG00000009330
ENSG00000132965
Arachidonate 5-lipoxygenase-activating protein precursor
Tissue enhanced
Detected in many
brain:
30.0
testis:
30.4
ANKAR
ENSSSCG00000016042
ENSG00000151687
Ankyrin and armadillo repeat containing
Tissue enhanced
Detected in many
choroid plexus:
11.1
testis:
16.5
ANKRD45
ENSSSCG00000015491
ENSG00000183831
Ankyrin repeat domain 45
Tissue enhanced
Detected in many
choroid plexus:
39.3
testis:
39.8
ANKRD53
ENSSSCG00000031976
ENSG00000144031
Ankyrin repeat domain 53
Tissue enhanced
Detected in many
adipose tissue:
11.9
kidney:
26.0
testis:
24.9
ANKRD9
ENSSSCG00000039713
ENSG00000156381
Ankyrin repeat domain 9
Tissue enhanced
Detected in many
liver:
24.5
testis:
55.6
ARHGAP20
ENSSSCG00000015015
ENSG00000137727
Rho GTPase activating protein 20
Tissue enhanced
Detected in many
pineal gland:
41.4
testis:
31.7
ARHGEF39
ENSSSCG00000005314
ENSG00000137135
Rho guanine nucleotide exchange factor 39
Tissue enhanced
Detected in many
lymphoid tissue:
33.4
testis:
37.3
ARID3C
ENSSSCG00000010971
ENSG00000205143
AT-rich interaction domain 3C
Tissue enhanced
Detected in many
testis:
33.8
ASF1B
ENSSSCG00000013772
ENSG00000105011
Histone chaperone ASF1B
Tissue enhanced
Detected in many
lymphoid tissue:
26.6
testis:
22.3
upper respiratory system:
26.7
ASXL3
ENSSSCG00000003736
ENSG00000141431
Additional sex combs like 3, transcriptional regulator
Tissue enhanced
Detected in many
brain:
11.6
lens:
12.4
testis:
16.1
ATAD2
ENSSSCG00000005983
ENSG00000156802
ATPase family, AAA domain containing 2
Tissue enhanced
Detected in many
lymphoid tissue:
45.1
testis:
37.3
ATF7IP2
ENSSSCG00000020675
ENSG00000166669
Activating transcription factor 7 interacting protein 2
Tissue enhanced
Detected in many
retina:
18.2
testis:
43.5
BEST1
ENSSSCG00000023090
ENSG00000167995
Bestrophin 1
Tissue enhanced
Detected in many
pineal gland:
23.3
retina:
30.1
testis:
29.2
vagus nerve:
23.4
BIN2
ENSSSCG00000000223
ENSG00000110934
Bridging integrator 2
Tissue enhanced
Detected in many
lymphoid tissue:
76.0
testis:
27.2
BIRC5
ENSSSCG00000040486
ENSG00000089685
Baculoviral IAP repeat-containing protein 5
Tissue enhanced
Detected in many
lymphoid tissue:
20.5
testis:
43.3
BSPRY
ENSSSCG00000021173
ENSG00000119411
B-box and SPRY domain containing
Tissue enhanced
Detected in many
large intestine:
20.8
testis:
29.4
BUB1B
ENSSSCG00000004782
ENSG00000156970
BUB1 mitotic checkpoint serine/threonine kinase B
Tissue enhanced
Detected in many
lymphoid tissue:
29.6
testis:
17.7
C11orf49
ENSSSCG00000013246
ENSG00000149179
UPF0705 protein C11orf49 homolog
Tissue enhanced
Detected in many
brain:
19.7
pineal gland:
15.8
testis:
20.2
C11orf70
ENSSSCG00000014980
ENSG00000137691
Chromosome 11 open reading frame 70
Tissue enhanced
Detected in many
choroid plexus:
29.2
kidney:
27.5
testis:
45.1
C14orf39
ENSSSCG00000005085
ENSG00000179008
Chromosome 14 open reading frame 39
Tissue enhanced
Detected in many
pituitary gland:
21.8
retina:
16.6
testis:
14.7
thyroid gland:
67.1
C1orf228
ENSSSCG00000033259
ENSG00000198520
Chromosome 1 open reading frame 228
Tissue enhanced
Detected in many
epididymis:
26.3
testis:
16.2
C22orf23
ENSSSCG00000000117
ENSG00000128346
Chromosome 22 open reading frame 23
Tissue enhanced
Detected in many
testis:
33.3
C3orf84
ENSSSCG00000011380
ENSG00000236980
Chromosome 3 open reading frame 84
Tissue enhanced
Detected in many
fallopian tube:
30.6
testis:
67.2
C4orf48
ENSSSCG00000008686
ENSG00000243449
Chromosome 4 open reading frame 48
Tissue enhanced
Detected in many
brain:
41.5
lens:
37.4
testis:
57.6
C5orf47
ENSSSCG00000035512
ENSG00000185056
Chromosome 5 open reading frame 47
Tissue enhanced
Detected in many
brain:
8.3
testis:
6.4
C5orf49
ENSSSCG00000017098
ENSG00000215217
Chromosome 5 open reading frame 49
Tissue enhanced
Detected in many
brain:
21.5
testis:
26.3
upper respiratory system:
33.7
C6orf163
ENSSSCG00000004301
ENSG00000203872
Chromosome 6 open reading frame 163
Tissue enhanced
Detected in many
pituitary gland:
18.2
testis:
39.6
C8orf89
ENSSSCG00000032228
ENSG00000274443
Chromosome 8 open reading frame 89
Tissue enhanced
Detected in many
brain:
25.8
testis:
28.1
C9orf24
ENSSSCG00000010980
ENSG00000164972
Chromosome 9 open reading frame 24
Tissue enhanced
Detected in many
choroid plexus:
17.5
fallopian tube:
20.2
testis:
68.6
CA9
ENSSSCG00000005315
ENSG00000107159
Carbonic anhydrase 9
Tissue enhanced
Detected in many
small intestine:
28.4
stomach:
90.1
testis:
37.7
CARMIL3
ENSSSCG00000002012
ENSG00000186648
Capping protein regulator and myosin 1 linker 3
Tissue enhanced
Detected in many
brain:
10.1
testis:
14.7
CATSPER4
ENSSSCG00000026526
ENSG00000188782
Cation channel sperm-associated protein 4
Tissue enhanced
Detected in many
skeletal muscle:
19.7
testis:
15.4
CATSPERE
ENSSSCG00000035850
ENSG00000179397
Catsper channel auxiliary subunit epsilon
Tissue enhanced
Detected in many
testis:
19.1
CCDC113
ENSSSCG00000002803
ENSG00000103021
Coiled-coil domain-containing protein 113
Tissue enhanced
Detected in many
fallopian tube:
19.5
testis:
12.7
upper respiratory system:
11.7
CCDC154
ENSSSCG00000028139
ENSG00000197599
Coiled-coil domain containing 154
Tissue enhanced
Detected in many
male glands:
18.7
testis:
18.2
CCDC157
ENSSSCG00000010003
ENSG00000187860
Coiled-coil domain containing 157
Tissue enhanced
Detected in many
testis:
68.0
CCDC160
ENSSSCG00000031011
ENSG00000203952
Coiled-coil domain containing 160
Tissue enhanced
Detected in many
testis:
35.7
CCDC173
ENSSSCG00000015935
ENSG00000154479
Coiled-coil domain containing 173
Tissue enhanced
Detected in many
fallopian tube:
40.6
testis:
30.4
CCDC183
ENSSSCG00000005830
ENSG00000213213
Coiled-coil domain containing 183
Tissue enhanced
Detected in many
male glands:
15.9
retina:
18.6
salivary gland:
43.4
testis:
27.7
CCDC189
ENSSSCG00000007778
ENSG00000196118
Coiled-coil domain containing 189
Tissue enhanced
Detected in many
testis:
29.2
CCDC36
ENSSSCG00000011376
ENSG00000173421
Coiled-coil domain containing 36
Tissue enhanced
Detected in many
testis:
65.9
CCDC60
ENSSSCG00000009842
ENSG00000183273
Coiled-coil domain containing 60
Tissue enhanced
Detected in many
skeletal muscle:
30.3
testis:
39.1
CCDC65
ENSSSCG00000000179
ENSG00000139537
Coiled-coil domain containing 65
Tissue enhanced
Detected in many
fallopian tube:
21.2
testis:
40.1
CCDC73
ENSSSCG00000026433
ENSG00000186714
Coiled-coil domain containing 73
Tissue enhanced
Detected in many
testis:
13.1
CCDC88A
ENSSSCG00000008406
ENSG00000115355
Coiled-coil domain containing 88A
Tissue enhanced
Detected in many
brain:
42.8
testis:
42.0
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