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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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280 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABHD4
ENSSSCG00000002051
ENSG00000100439
Abhydrolase domain containing 4
Tissue enhanced
Detected in all
testis:
61.8
ACP4
ENSSSCG00000024736
ENSG00000142513
Acid phosphatase 4
Tissue enhanced
Detected in all
lens:
40.4
testis:
36.4
ACSF2
ENSSSCG00000017566
ENSG00000167107
Acyl-CoA synthetase family member 2
Tissue enhanced
Detected in all
testis:
110.3
AFAP1
ENSSSCG00000023907
ENSG00000196526
Actin filament-associated protein 1
Tissue enhanced
Detected in all
testis:
51.0
AGBL2
ENSSSCG00000040838
ENSG00000165923
ATP/GTP binding protein like 2
Tissue enhanced
Detected in all
testis:
50.5
AGBL3
ENSSSCG00000016529
ENSG00000146856
ATP/GTP binding protein like 3
Tissue enhanced
Detected in all
testis:
46.4
AIFM2
ENSSSCG00000010258
ENSG00000042286
Apoptosis inducing factor, mitochondria associated 2
Tissue enhanced
Detected in all
adipose tissue:
40.1
testis:
38.3
AK8
ENSSSCG00000039188
ENSG00000165695
Adenylate kinase 8
Tissue enhanced
Detected in all
fallopian tube:
28.4
testis:
33.9
upper respiratory system:
32.2
AKAP1
ENSSSCG00000034994
ENSG00000121057
A-kinase anchor protein 1, mitochondrial
Tissue enhanced
Detected in all
heart:
54.5
testis:
78.8
ALMS1
ENSSSCG00000037977
ENSG00000116127
ALMS1, centrosome and basal body associated protein
Tissue enhanced
Detected in all
testis:
85.4
ANGEL1
ENSSSCG00000002390
ENSG00000013523
Angel homolog 1
Tissue enhanced
Detected in all
testis:
42.9
ANKRD61
ENSSSCG00000007593
ENSG00000157999
Ankyrin repeat domain 61
Tissue enhanced
Detected in all
testis:
24.9
AP1M1
ENSSSCG00000013856
ENSG00000072958
AP-1 complex subunit mu-1
Tissue enhanced
Detected in all
testis:
85.0
AP2B1
ENSSSCG00000017712
ENSG00000006125
AP-2 complex subunit beta
Tissue enhanced
Detected in all
testis:
64.4
AQP11
ENSSSCG00000014880
ENSG00000178301
Aquaporin-11
Tissue enhanced
Detected in all
testis:
37.0
ARID3A
ENSSSCG00000037642
ENSG00000116017
AT-rich interaction domain 3A
Tissue enhanced
Detected in all
testis:
40.3
ARL9
ENSSSCG00000008899
ENSG00000196503
ADP ribosylation factor like GTPase 9
Tissue enhanced
Detected in all
testis:
53.7
ARMC3
ENSSSCG00000011078
ENSG00000165309
Armadillo repeat containing 3
Tissue enhanced
Detected in all
testis:
27.4
ASRGL1
ENSSSCG00000013065
ENSG00000162174
Asparaginase like 1
Tissue enhanced
Detected in all
testis:
45.8
ATRIP
ENSSSCG00000011359
ENSG00000164053
ATR interacting protein
Tissue enhanced
Detected in all
testis:
33.3
ATXN2L
ENSSSCG00000021845
ENSG00000168488
Ataxin 2 like
Tissue enhanced
Detected in all
testis:
137.6
AURKC
ENSSSCG00000034174
ENSG00000105146
Aurora kinase C
Tissue enhanced
Detected in all
testis:
36.7
BCAP29
ENSSSCG00000022869
ENSG00000075790
B cell receptor associated protein 29
Tissue enhanced
Detected in all
testis:
90.1
BCKDHB
ENSSSCG00000004465
ENSG00000083123
2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
Tissue enhanced
Detected in all
testis:
70.0
BCL2L14
ENSSSCG00000000623
ENSG00000121380
Apoptosis facilitator Bcl-2-like protein 14
Tissue enhanced
Detected in all
testis:
21.1
BSCL2
ENSSSCG00000020823
ENSG00000168000
Seipin isoform 1
Tissue enhanced
Detected in all
testis:
129.5
C16orf87
ENSSSCG00000022333
ENSG00000155330
Chromosome 16 open reading frame 87
Tissue enhanced
Detected in all
testis:
31.0
C1orf174
ENSSSCG00000031102
ENSG00000198912
UPF0688 protein C1orf174 homolog
Tissue enhanced
Detected in all
testis:
29.5
C2orf42
ENSSSCG00000008332
ENSG00000115998
Uncharacterized protein C2orf42 homolog
Tissue enhanced
Detected in all
testis:
39.8
C4orf46
ENSSSCG00000028492
ENSG00000205208
Chromosome 4 open reading frame 46
Tissue enhanced
Detected in all
testis:
20.0
C8orf82
ENSSSCG00000005895
ENSG00000213563
Chromosome 8 open reading frame 82
Tissue enhanced
Detected in all
testis:
65.2
C9orf135
ENSSSCG00000035668
ENSG00000204711
Chromosome 9 open reading frame 135
Tissue enhanced
Detected in all
testis:
31.0
CABLES2
ENSSSCG00000007540
ENSG00000149679
Cdk5 and Abl enzyme substrate 2
Tissue enhanced
Detected in all
testis:
34.1
CAGE1
ENSSSCG00000038886
ENSG00000164304
Cancer antigen 1
Tissue enhanced
Detected in all
testis:
33.6
CATSPERG
ENSSSCG00000002955
ENSG00000099338
Cation channel sperm associated auxiliary subunit gamma
Tissue enhanced
Detected in all
testis:
62.0
CCDC130
ENSSSCG00000013755
ENSG00000104957
Coiled-coil domain containing 130
Tissue enhanced
Detected in all
testis:
64.1
CCDC146
ENSSSCG00000015412
ENSG00000135205
Coiled-coil domain containing 146
Tissue enhanced
Detected in all
fallopian tube:
31.2
testis:
32.7
CCDC15
ENSSSCG00000015206
ENSG00000149548
Coiled-coil domain containing 15
Tissue enhanced
Detected in all
testis:
47.0
CCDC158
ENSSSCG00000008983
ENSG00000163749
Coiled-coil domain containing 158
Tissue enhanced
Detected in all
testis:
35.1
CCDC18
ENSSSCG00000006897
ENSG00000122483
Coiled-coil domain containing 18
Tissue enhanced
Detected in all
testis:
33.2
CCDC34
ENSSSCG00000013336
ENSG00000109881
Coiled-coil domain containing 34
Tissue enhanced
Detected in all
testis:
33.7
CCDC92
ENSSSCG00000009764
ENSG00000119242
Coiled-coil domain containing 92
Tissue enhanced
Detected in all
brain:
28.6
testis:
50.6
CCNY
ENSSSCG00000011107
ENSG00000108100
Cyclin-Y
Tissue enhanced
Detected in all
testis:
85.7
CDKN3
ENSSSCG00000005047
ENSG00000100526
Cyclin-dependent kinase inhibitor 3
Tissue enhanced
Detected in all
testis:
63.9
CENPT
ENSSSCG00000002768
ENSG00000102901
Centromere protein T
Tissue enhanced
Detected in all
lymphoid tissue:
27.1
testis:
22.3
CEP44
ENSSSCG00000032475
ENSG00000164118
Centrosomal protein 44
Tissue enhanced
Detected in all
testis:
27.8
CEP57L1
ENSSSCG00000004391
ENSG00000183137
Centrosomal protein 57 like 1
Tissue enhanced
Detected in all
testis:
20.6
CEP63
ENSSSCG00000011645
ENSG00000182923
Centrosomal protein 63
Tissue enhanced
Detected in all
testis:
80.9
CEP85
ENSSSCG00000026731
ENSG00000130695
Centrosomal protein 85
Tissue enhanced
Detected in all
heart:
36.1
skeletal muscle:
50.6
testis:
59.8
CFAP126
ENSSSCG00000023957
ENSG00000188931
Cilia and flagella associated protein 126
Tissue enhanced
Detected in all
choroid plexus:
63.1
fallopian tube:
75.7
testis:
53.2
upper respiratory system:
71.6
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