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Chromosome
1
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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45 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FDXR
ENSSSCG00000017227
ENSG00000161513
NADPH:adrenodoxin oxidoreductase, mitochondrial
Group enriched
Detected in many
adrenal gland:
79.0
ovary:
21.4
testis:
19.8
na
ENSSSCG00000028166
ENSG00000184650
Outer dense fiber protein 4
Group enriched
Detected in many
male glands:
21.4
testis:
73.2
YPEL1
ENSSSCG00000037288
ENSG00000100027
Yippee like 1
Group enriched
Detected in many
brain:
26.2
testis:
103.5
ZMYND15
ENSSSCG00000017921
ENSG00000141497
Zinc finger MYND-type containing 15
Group enriched
Detected in many
adipose tissue:
15.1
mesothelial tissue:
56.3
testis:
28.6
DNAJB7
ENSSSCG00000034801
ENSG00000172404
DnaJ heat shock protein family (Hsp40) member B7
Group enriched
Detected in many
small intestine:
15.6
testis:
26.4
TCFL5
ENSSSCG00000038631
ENSG00000101190
Transcription factor like 5
Group enriched
Detected in many
cartilage:
90.0
testis:
31.2
DUSP15
ENSSSCG00000007232
ENSG00000149599
Dual specificity phosphatase 15
Group enriched
Detected in many
testis:
74.0
vagus nerve:
20.7
EDDM3B
ENSSSCG00000021866
ENSG00000181552,ENSG00000181562
Epididymal secretory protein E3-beta precursor
Group enriched
Detected in many
ductus deferens:
54.5
epididymis:
177.7
male glands:
55.5
testis:
77.3
ESCO2
ENSSSCG00000009670
ENSG00000171320
Establishment of sister chromatid cohesion N-acetyltransferase 2
Group enriched
Detected in many
lymphoid tissue:
10.9
testis:
37.1
ICA1L
ENSSSCG00000016115
ENSG00000163596
Islet cell autoantigen 1 like
Group enriched
Detected in many
brain:
16.6
testis:
52.6
MCMDC2
ENSSSCG00000006205
ENSG00000178460
Minichromosome maintenance domain containing 2
Group enriched
Detected in many
choroid plexus:
10.7
testis:
18.4
na
ENSSSCG00000002657
ENSG00000260456
Group enriched
Detected in many
epididymis:
13.6
testis:
26.4
SH3GL3
ENSSSCG00000001795
ENSG00000140600
SH3 domain containing GRB2 like 3, endophilin A3
Group enriched
Detected in many
brain:
43.5
testis:
22.4
SYCP2
ENSSSCG00000007529
ENSG00000196074
Synaptonemal complex protein 2
Group enriched
Detected in many
epididymis:
13.9
testis:
55.2
TMEM210
ENSSSCG00000031168
ENSG00000185863
Transmembrane protein 210
Group enriched
Detected in many
male glands:
32.4
testis:
72.1
ARHGAP33
ENSSSCG00000039135
ENSG00000004777
Rho GTPase activating protein 33
Group enriched
Detected in many
brain:
18.6
lymphoid tissue:
14.2
testis:
39.4
C4orf17
ENSSSCG00000009181
ENSG00000138813
Chromosome 4 open reading frame 17
Group enriched
Detected in many
fallopian tube:
22.7
liver:
20.2
testis:
48.0
CCDC171
ENSSSCG00000005182
ENSG00000164989
Coiled-coil domain containing 171
Group enriched
Detected in many
fallopian tube:
10.0
testis:
39.7
CDCA2
ENSSSCG00000009653
ENSG00000184661
Cell division cycle associated 2
Group enriched
Detected in many
lymphoid tissue:
14.7
testis:
44.3
ELOVL2
ENSSSCG00000001045
ENSG00000197977
ELOVL fatty acid elongase 2
Group enriched
Detected in many
brain:
34.3
pineal gland:
12.8
retina:
14.3
testis:
19.2
vagus nerve:
25.6
ESPN
ENSSSCG00000003374
ENSG00000187017
Espin
Group enriched
Detected in many
epididymis:
92.1
retina:
24.2
testis:
77.5
FZD9
ENSSSCG00000023004
ENSG00000188763
Frizzled class receptor 9
Group enriched
Detected in many
cartilage:
34.9
choroid plexus:
18.2
testis:
9.9
IQCG
ENSSSCG00000011855
ENSG00000114473
IQ motif containing G
Group enriched
Detected in many
fallopian tube:
26.5
lung:
10.1
testis:
38.2
upper respiratory system:
15.2
na
ENSSSCG00000020658
Group enriched
Detected in many
adrenal gland:
11.6
liver:
27.7
testis:
32.5
na
ENSSSCG00000040026
Group enriched
Detected in many
fallopian tube:
7.6
small intestine:
19.7
testis:
8.3
vagus nerve:
16.5
POLN
ENSSSCG00000008684
ENSG00000130997
DNA polymerase nu
Group enriched
Detected in many
lymphoid tissue:
23.4
testis:
24.9
PPP1R42
ENSSSCG00000006204
ENSG00000178125
Protein phosphatase 1 regulatory subunit 42
Group enriched
Detected in many
choroid plexus:
10.5
testis:
31.6
RGSL1
ENSSSCG00000015548
ENSG00000121446
Regulator of G protein signaling like 1
Group enriched
Detected in many
epididymis:
40.1
testis:
14.4
RPGRIP1
ENSSSCG00000002129
ENSG00000092200
RPGR interacting protein 1
Group enriched
Detected in many
epididymis:
15.0
retina:
21.4
testis:
51.9
SYCE1L
ENSSSCG00000002700
ENSG00000205078
Synaptonemal complex central element protein 1 like
Group enriched
Detected in many
cornea:
7.9
testis:
28.5
CCDC89
ENSSSCG00000014908
ENSG00000179071
Coiled-coil domain containing 89
Group enriched
Detected in many
stomach:
26.1
testis:
40.6
CLGN
ENSSSCG00000026360
ENSG00000153132
Calmegin precursor
Group enriched
Detected in many
choroid plexus:
20.8
male glands:
21.9
testis:
81.2
CRIP3
ENSSSCG00000001672
ENSG00000146215
Cysteine rich protein 3
Group enriched
Detected in many
heart:
6.8
liver:
20.1
lymphoid tissue:
11.2
testis:
15.1
FRMD1
ENSSSCG00000004017
ENSG00000153303
FERM domain containing 1
Group enriched
Detected in many
gallbladder:
17.9
kidney:
49.5
testis:
53.6
GOLGA7B
ENSSSCG00000040359
ENSG00000155265
Golgin A7 family member B
Group enriched
Detected in many
brain:
21.4
skin:
13.3
testis:
22.9
HEATR9
ENSSSCG00000017706
ENSG00000270379
HEAT repeat containing 9
Group enriched
Detected in many
choroid plexus:
8.2
testis:
22.9
JPH4
ENSSSCG00000002014
ENSG00000092051
Junctophilin 4
Group enriched
Detected in many
brain:
44.3
testis:
30.8
KHDRBS3
ENSSSCG00000005941
ENSG00000131773
KH RNA binding domain containing, signal transduction associated 3
Group enriched
Detected in many
brain:
38.0
testis:
45.1
LRRD1
ENSSSCG00000029092
ENSG00000240720
Leucine rich repeats and death domain containing 1
Group enriched
Detected in many
liver:
8.2
testis:
30.1
na
ENSSSCG00000008421
ENSG00000138039
Sus scrofa lutropin-choriogonadotropic hormone receptor-like (LOC100623180), mRNA.
Group enriched
Detected in many
ovary:
28.1
testis:
49.6
na
ENSSSCG00000009685
Group enriched
Detected in many
brain:
6.9
kidney:
5.8
liver:
6.7
testis:
22.5
na
ENSSSCG00000010610
ENSG00000148834
Group enriched
Detected in many
adrenal gland:
19.1
liver:
34.1
small intestine:
8.7
testis:
9.2
na
ENSSSCG00000032638
Group enriched
Detected in many
brain:
5.7
testis:
18.8
na
ENSSSCG00000034036
ENSG00000260220
Group enriched
Detected in many
fallopian tube:
32.5
lung:
26.1
testis:
42.2
upper respiratory system:
21.9
PPEF1
ENSSSCG00000030274
ENSG00000086717
Protein phosphatase with EF-hand domain 1
Group enriched
Detected in many
brain:
37.4
testis:
15.5
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