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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Biological process
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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RELEASE HISTORY
1343 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000032898
Group enriched
Detected in some
lens:
137.3
testis:
88.6
INSL3
ENSSSCG00000013887
ENSG00000248099
Insulin-like 3 Insulin-like 3 B chain Insulin-like 3 A chain
Tissue enriched
Detected in some
testis:
468.6
PRM1
ENSSSCG00000021337
Sperm protamine P1
Tissue enriched
Detected in some
testis:
1334.7
HIST1H2BA
ENSSSCG00000036045
ENSG00000146047
Histone cluster 1 H2B family member a
Tissue enriched
Detected in some
testis:
359.7
HIST1H1T
ENSSSCG00000033398
ENSG00000187475
Histone cluster 1 H1 family member t
Tissue enriched
Detected in some
testis:
281.9
CYP17A1
ENSSSCG00000010591
ENSG00000148795
Steroid 17-alpha-hydroxylase/17,20 lyase
Group enriched
Detected in some
adrenal gland:
453.1
testis:
241.1
CSTL1
ENSSSCG00000007121
ENSG00000125823
Cystatin like 1
Group enriched
Detected in some
epididymis:
24.5
testis:
41.2
PRM2
ENSSSCG00000024307
Protamine-2 precursor
Tissue enriched
Detected in some
testis:
368.9
na
ENSSSCG00000016789
Group enriched
Detected in some
testis:
10.7
thyroid gland:
15.8
TPPP2
ENSSSCG00000021950
ENSG00000179636
Tubulin polymerization promoting protein family member 2
Tissue enriched
Detected in some
testis:
169.0
PRM3
ENSSSCG00000035607
ENSG00000178257
Protamine 3
Tissue enriched
Detected in some
testis:
187.8
PHF7
ENSSSCG00000011439
ENSG00000010318
PHD finger protein 7
Tissue enriched
Detected in some
testis:
161.2
CYP11A1
ENSSSCG00000025273
ENSG00000140459
Cholesterol side-chain cleavage enzyme, mitochondrial
Group enriched
Detected in some
adrenal gland:
230.0
ovary:
287.1
testis:
79.2
IRGC
ENSSSCG00000003066
ENSG00000124449
Interferon-inducible GTPase 5
Tissue enriched
Detected in some
testis:
130.9
TEX35
ENSSSCG00000031220
ENSG00000240021
Testis expressed 35
Tissue enriched
Detected in some
testis:
211.8
na
ENSSSCG00000036361
Group enriched
Detected in some
heart:
13.5
male glands:
15.3
testis:
23.5
SYNGR4
ENSSSCG00000003131
ENSG00000105467
Synaptogyrin 4
Tissue enriched
Detected in some
testis:
100.7
ACR
ENSSSCG00000021265
ENSG00000100312
Acrosin precursor
Tissue enriched
Detected in some
testis:
102.7
na
ENSSSCG00000031571
Tissue enriched
Detected in some
testis:
102.2
na
ENSSSCG00000011967
Tissue enriched
Detected in some
testis:
106.0
na
ENSSSCG00000035857
ENSG00000089505
Tissue enriched
Detected in some
testis:
112.1
na
ENSSSCG00000031548
Group enriched
Detected in some
liver:
6.9
skin:
4.7
testis:
13.0
SPATA3
ENSSSCG00000016269
ENSG00000173699
Spermatogenesis-associated protein 3
Tissue enriched
Detected in some
testis:
231.7
TMEM239
ENSSSCG00000007169
ENSG00000198326
Transmembrane protein 239
Tissue enriched
Detected in some
testis:
108.8
na
ENSSSCG00000008607
ENSG00000185013,ENSG00000250741
Tissue enriched
Detected in some
testis:
81.6
na
ENSSSCG00000013536
ENSG00000130377
Group enriched
Detected in some
lens:
73.2
testis:
41.8
C3orf22
ENSSSCG00000011626
ENSG00000180697
Chromosome 3 open reading frame 22
Tissue enriched
Detected in some
testis:
159.5
na
ENSSSCG00000038331
ENSG00000130518
Tissue enriched
Detected in some
testis:
171.6
OAZ3
ENSSSCG00000027091
ENSG00000143450
Sus scrofa ornithine decarboxylase antizyme 3 (OAZ3), transcript variant 2, mRNA.
Tissue enriched
Detected in some
testis:
243.9
na
ENSSSCG00000007125
Tissue enriched
Detected in some
testis:
98.6
CCDC83
ENSSSCG00000014912
ENSG00000150676
Coiled-coil domain containing 83
Tissue enriched
Detected in some
testis:
70.9
LDHC
ENSSSCG00000013363
ENSG00000166796
L-lactate dehydrogenase C chain
Tissue enriched
Detected in some
testis:
76.1
na
ENSSSCG00000016977
Tissue enriched
Detected in some
testis:
154.7
na
ENSSSCG00000040858
Tissue enriched
Detected in some
testis:
76.4
SPEM2
ENSSSCG00000024584
ENSG00000184560
SPEM family member 2
Tissue enriched
Detected in some
testis:
148.7
na
ENSSSCG00000001633
ENSG00000214732
Tissue enriched
Detected in some
testis:
140.1
na
ENSSSCG00000007123
Tissue enriched
Detected in some
testis:
104.0
PKD2L2
ENSSSCG00000026421
ENSG00000078795
Polycystin 2 like 2, transient receptor potential cation channel
Tissue enriched
Detected in some
testis:
92.6
DDX4
ENSSSCG00000016913
ENSG00000152670
Probable ATP-dependent RNA helicase DDX4
Tissue enriched
Detected in some
testis:
73.8
PLA2G4D
ENSSSCG00000004733
ENSG00000159337
Phospholipase A2 group IVD
Group enriched
Detected in some
mouth:
7.1
skin:
16.7
testis:
8.0
FTMT
ENSSSCG00000014231
ENSG00000181867
Ferritin mitochondrial
Tissue enriched
Detected in some
testis:
61.8
na
ENSSSCG00000006486
Tissue enriched
Detected in some
testis:
127.5
PCSK4
ENSSSCG00000024379
ENSG00000115257
Proprotein convertase subtilisin/kexin type 4
Tissue enriched
Detected in some
testis:
77.8
GSG1
ENSSSCG00000039316
ENSG00000111305
Germ cell associated 1
Tissue enriched
Detected in some
testis:
187.0
CFAP97D1
ENSSSCG00000017373
ENSG00000231256
CFAP97 domain containing 1
Tissue enriched
Detected in some
testis:
143.7
FANCD2OS
ENSSSCG00000034155
ENSG00000163705
FANCD2 opposite strand
Tissue enriched
Detected in some
testis:
68.3
na
ENSSSCG00000038292
ENSG00000283758
Tissue enriched
Detected in some
testis:
141.2
na
ENSSSCG00000027356
Tissue enriched
Detected in some
testis:
81.9
STAR
ENSSSCG00000034942
ENSG00000147465
Steroidogenic acute regulatory protein, mitochondrial precursor
Group enriched
Detected in some
adrenal gland:
171.0
ovary:
176.9
testis:
78.5
na
ENSSSCG00000016392
Tissue enriched
Detected in some
testis:
81.3
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