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Chromosome
1
2
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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513 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ACBD7
ENSSSCG00000038184
ENSG00000176244
Acyl-CoA binding domain containing 7
Tissue enhanced
Detected in many
brain:
14.0
retina:
23.0
ADD2
ENSSSCG00000020736
ENSG00000075340
Adducin 2
Tissue enhanced
Detected in some
brain:
29.2
cervix:
35.0
endometrium:
17.3
ovary:
15.1
retina:
17.8
ADGRB3
ENSSSCG00000004270
ENSG00000135298
Adhesion G protein-coupled receptor B3
Tissue enhanced
Detected in some
brain:
22.8
pineal gland:
14.5
retina:
8.2
ADGRV1
ENSSSCG00000035025
ENSG00000164199
Adhesion G protein-coupled receptor V1
Tissue enhanced
Detected in many
choroid plexus:
71.4
pineal gland:
18.8
retina:
25.8
AGPAT3
ENSSSCG00000038081
ENSG00000160216
1-acyl-sn-glycerol-3-phosphate acyltransferase gamma
Tissue enhanced
Detected in all
retina:
64.7
ALDOC
ENSSSCG00000017759
ENSG00000109107
Fructose-bisphosphate aldolase C
Tissue enhanced
Detected in many
adipose tissue:
85.9
brain:
145.7
pineal gland:
49.1
retina:
64.5
AP3B2
ENSSSCG00000001807
ENSG00000103723
Adaptor related protein complex 3 beta 2 subunit
Tissue enhanced
Detected in many
brain:
22.5
pineal gland:
16.2
retina:
13.5
ASIC4
ENSSSCG00000029968
ENSG00000072182
Acid sensing ion channel subunit family member 4
Tissue enhanced
Detected in some
brain:
11.9
pituitary gland:
14.0
retina:
24.4
ATF7IP2
ENSSSCG00000020675
ENSG00000166669
Activating transcription factor 7 interacting protein 2
Tissue enhanced
Detected in many
retina:
18.2
testis:
43.5
ATP8A1
ENSSSCG00000008803
ENSG00000124406
ATPase phospholipid transporting 8A1
Tissue enhanced
Detected in many
brain:
57.6
retina:
35.6
vagus nerve:
42.2
ATP8A2
ENSSSCG00000035421
ENSG00000132932
ATPase phospholipid transporting 8A2
Tissue enhanced
Detected in all
brain:
29.4
pineal gland:
18.8
retina:
56.1
B3GAT2
ENSSSCG00000026246
ENSG00000112309
Beta-1,3-glucuronyltransferase 2
Tissue enhanced
Detected in many
brain:
13.5
retina:
11.3
BEST1
ENSSSCG00000023090
ENSG00000167995
Bestrophin 1
Tissue enhanced
Detected in many
pineal gland:
23.3
retina:
30.1
testis:
29.2
vagus nerve:
23.4
BRSK2
ENSSSCG00000037337
ENSG00000174672
BR serine/threonine kinase 2
Tissue enhanced
Detected in some
brain:
26.5
retina:
17.2
C14orf39
ENSSSCG00000005085
ENSG00000179008
Chromosome 14 open reading frame 39
Tissue enhanced
Detected in many
pituitary gland:
21.8
retina:
16.6
testis:
14.7
thyroid gland:
67.1
C21orf91
ENSSSCG00000033025
ENSG00000154642
Chromosome 21 open reading frame 91
Tissue enhanced
Detected in all
brain:
38.0
retina:
44.2
C2CD2
ENSSSCG00000025821
ENSG00000157617
C2 calcium dependent domain containing 2
Tissue enhanced
Detected in all
retina:
48.7
C3orf14
ENSSSCG00000011486
ENSG00000114405
Chromosome 3 open reading frame 14
Tissue enhanced
Detected in many
brain:
13.4
pineal gland:
18.9
pituitary gland:
10.1
retina:
9.6
C3orf18
ENSSSCG00000037433
ENSG00000088543
Chromosome 3 open reading frame 18
Tissue enhanced
Detected in many
retina:
14.2
CA10
ENSSSCG00000023169
ENSG00000154975
Carbonic anhydrase 10
Tissue enhanced
Detected in some
brain:
38.6
pineal gland:
34.4
retina:
18.7
CACNG2
ENSSSCG00000033551
ENSG00000166862
Calcium voltage-gated channel auxiliary subunit gamma 2
Tissue enhanced
Detected in some
brain:
15.4
retina:
5.4
CACNG5
ENSSSCG00000036461
ENSG00000075429
Calcium voltage-gated channel auxiliary subunit gamma 5
Tissue enhanced
Detected in some
adipose tissue:
8.6
brain:
37.1
retina:
14.7
CACNG7
ENSSSCG00000025532
ENSG00000105605
Calcium voltage-gated channel auxiliary subunit gamma 7
Tissue enhanced
Detected in some
brain:
49.8
pineal gland:
14.7
retina:
15.6
CADM2
ENSSSCG00000011999
ENSG00000175161
Cell adhesion molecule 2
Tissue enhanced
Detected in some
brain:
51.0
pineal gland:
22.4
retina:
25.0
CADPS
ENSSSCG00000011489
ENSG00000163618
Calcium dependent secretion activator
Tissue enhanced
Detected in some
brain:
34.3
cornea:
14.2
pituitary gland:
14.2
retina:
54.8
CCDC126
ENSSSCG00000029174
ENSG00000169193
Coiled-coil domain containing 126
Tissue enhanced
Detected in all
pineal gland:
42.0
retina:
37.1
CCDC181
ENSSSCG00000028804
ENSG00000117477
Coiled-coil domain-containing protein 181
Tissue enhanced
Detected in many
choroid plexus:
27.5
pineal gland:
39.1
pituitary gland:
27.4
retina:
33.1
CCDC183
ENSSSCG00000005830
ENSG00000213213
Coiled-coil domain containing 183
Tissue enhanced
Detected in many
male glands:
15.9
retina:
18.6
salivary gland:
43.4
testis:
27.7
CCDC184
ENSSSCG00000039340
ENSG00000177875
Coiled-coil domain containing 184
Tissue enhanced
Detected in some
brain:
18.8
pituitary gland:
13.3
retina:
5.3
testis:
6.0
CD207
ENSSSCG00000008319
ENSG00000116031
C-type lectin domain family 4 member K
Tissue enhanced
Detected in many
retina:
25.7
skin:
18.6
CDH10
ENSSSCG00000016802
ENSG00000040731
Cadherin 10
Tissue enhanced
Detected in some
brain:
21.6
pituitary gland:
5.0
retina:
6.3
CDH12
ENSSSCG00000016799
ENSG00000154162
Cadherin 12
Tissue enhanced
Detected in some
brain:
18.4
retina:
9.4
smooth muscle:
9.5
CELF4
ENSSSCG00000003748
ENSG00000101489
CUGBP Elav-like family member 4
Tissue enhanced
Detected in many
brain:
31.3
pineal gland:
18.6
retina:
12.7
CELSR3
ENSSSCG00000011360
ENSG00000008300
Cadherin EGF LAG seven-pass G-type receptor 3
Tissue enhanced
Detected in some
brain:
16.7
pituitary gland:
9.2
retina:
9.7
testis:
16.2
CEND1
ENSSSCG00000012845
ENSG00000184524
Cell cycle exit and neuronal differentiation protein 1
Tissue enhanced
Detected in some
brain:
53.1
pineal gland:
20.0
retina:
11.6
CERKL
ENSSSCG00000016010
ENSG00000188452
Ceramide kinase like
Tissue enhanced
Detected in some
fallopian tube:
15.5
pineal gland:
42.1
retina:
36.9
CHRNB3
ENSSSCG00000026363
ENSG00000147432
Cholinergic receptor nicotinic beta 3 subunit
Tissue enhanced
Detected in some
brain:
27.4
retina:
15.2
testis:
6.4
CKB
ENSSSCG00000021220
ENSG00000166165
Creatine kinase B-type
Tissue enhanced
Detected in many
brain:
121.7
pineal gland:
104.9
retina:
70.4
smooth muscle:
65.9
CLCN4
ENSSSCG00000024809
ENSG00000073464
Chloride voltage-gated channel 4
Tissue enhanced
Detected in many
brain:
26.5
lens:
27.1
pineal gland:
12.6
retina:
12.6
CLVS2
ENSSSCG00000004232
ENSG00000146352
Clavesin 2
Tissue enhanced
Detected in many
brain:
26.9
retina:
12.3
vagus nerve:
11.9
CNGA3
ENSSSCG00000027113
ENSG00000144191
Cyclic nucleotide gated channel alpha 3
Tissue enhanced
Detected in many
retina:
15.1
skin:
20.3
smooth muscle:
19.4
CPLX1
ENSSSCG00000037527
ENSG00000168993
Complexin 1
Tissue enhanced
Detected in some
brain:
72.4
kidney:
15.6
retina:
24.1
CPSF4L
ENSSSCG00000040611
ENSG00000187959
Cleavage and polyadenylation specific factor 4 like
Tissue enhanced
Detected in many
male glands:
23.9
retina:
20.1
salivary gland:
18.8
CRMP1
ENSSSCG00000022896
ENSG00000072832
Collapsin response mediator protein 1
Tissue enhanced
Detected in some
brain:
46.6
pineal gland:
17.7
retina:
18.9
CSRNP3
ENSSSCG00000015906
ENSG00000178662
Cysteine and serine rich nuclear protein 3
Tissue enhanced
Detected in many
brain:
27.4
retina:
21.7
CYP26A1
ENSSSCG00000010475
ENSG00000095596
Cytochrome P450, family 26, subfamily A, polypeptide 1
Tissue enhanced
Detected in some
brain:
10.6
cornea:
10.6
endometrium:
15.5
retina:
6.7
DIRAS2
ENSSSCG00000031694
ENSG00000165023
GTP-binding protein Di-Ras2
Tissue enhanced
Detected in some
brain:
64.8
gallbladder:
15.6
pineal gland:
33.2
retina:
16.9
DISP3
ENSSSCG00000003417
ENSG00000204624
Dispatched RND transporter family member 3
Tissue enhanced
Detected in some
brain:
13.0
epididymis:
5.6
pineal gland:
13.9
retina:
5.4
DLEC1
ENSSSCG00000011249
ENSG00000008226
Deleted in lung and esophageal cancer 1
Tissue enhanced
Detected in many
fallopian tube:
22.8
retina:
23.7
DLG4
ENSSSCG00000024285
ENSG00000132535
Discs large MAGUK scaffold protein 4
Tissue enhanced
Detected in all
brain:
59.7
pineal gland:
35.1
retina:
43.1
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