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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
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14
15
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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171 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ACBD7
ENSSSCG00000038184
ENSG00000176244
Acyl-CoA binding domain containing 7
Tissue enhanced
Detected in many
brain:
14.0
retina:
23.0
ADGRV1
ENSSSCG00000035025
ENSG00000164199
Adhesion G protein-coupled receptor V1
Tissue enhanced
Detected in many
choroid plexus:
71.4
pineal gland:
18.8
retina:
25.8
ALDOC
ENSSSCG00000017759
ENSG00000109107
Fructose-bisphosphate aldolase C
Tissue enhanced
Detected in many
adipose tissue:
85.9
brain:
145.7
pineal gland:
49.1
retina:
64.5
AP3B2
ENSSSCG00000001807
ENSG00000103723
Adaptor related protein complex 3 beta 2 subunit
Tissue enhanced
Detected in many
brain:
22.5
pineal gland:
16.2
retina:
13.5
ATF7IP2
ENSSSCG00000020675
ENSG00000166669
Activating transcription factor 7 interacting protein 2
Tissue enhanced
Detected in many
retina:
18.2
testis:
43.5
ATP8A1
ENSSSCG00000008803
ENSG00000124406
ATPase phospholipid transporting 8A1
Tissue enhanced
Detected in many
brain:
57.6
retina:
35.6
vagus nerve:
42.2
B3GAT2
ENSSSCG00000026246
ENSG00000112309
Beta-1,3-glucuronyltransferase 2
Tissue enhanced
Detected in many
brain:
13.5
retina:
11.3
BEST1
ENSSSCG00000023090
ENSG00000167995
Bestrophin 1
Tissue enhanced
Detected in many
pineal gland:
23.3
retina:
30.1
testis:
29.2
vagus nerve:
23.4
C14orf39
ENSSSCG00000005085
ENSG00000179008
Chromosome 14 open reading frame 39
Tissue enhanced
Detected in many
pituitary gland:
21.8
retina:
16.6
testis:
14.7
thyroid gland:
67.1
C3orf14
ENSSSCG00000011486
ENSG00000114405
Chromosome 3 open reading frame 14
Tissue enhanced
Detected in many
brain:
13.4
pineal gland:
18.9
pituitary gland:
10.1
retina:
9.6
C3orf18
ENSSSCG00000037433
ENSG00000088543
Chromosome 3 open reading frame 18
Tissue enhanced
Detected in many
retina:
14.2
CCDC181
ENSSSCG00000028804
ENSG00000117477
Coiled-coil domain-containing protein 181
Tissue enhanced
Detected in many
choroid plexus:
27.5
pineal gland:
39.1
pituitary gland:
27.4
retina:
33.1
CCDC183
ENSSSCG00000005830
ENSG00000213213
Coiled-coil domain containing 183
Tissue enhanced
Detected in many
male glands:
15.9
retina:
18.6
salivary gland:
43.4
testis:
27.7
CD207
ENSSSCG00000008319
ENSG00000116031
C-type lectin domain family 4 member K
Tissue enhanced
Detected in many
retina:
25.7
skin:
18.6
CELF4
ENSSSCG00000003748
ENSG00000101489
CUGBP Elav-like family member 4
Tissue enhanced
Detected in many
brain:
31.3
pineal gland:
18.6
retina:
12.7
CKB
ENSSSCG00000021220
ENSG00000166165
Creatine kinase B-type
Tissue enhanced
Detected in many
brain:
121.7
pineal gland:
104.9
retina:
70.4
smooth muscle:
65.9
CLCN4
ENSSSCG00000024809
ENSG00000073464
Chloride voltage-gated channel 4
Tissue enhanced
Detected in many
brain:
26.5
lens:
27.1
pineal gland:
12.6
retina:
12.6
CLVS2
ENSSSCG00000004232
ENSG00000146352
Clavesin 2
Tissue enhanced
Detected in many
brain:
26.9
retina:
12.3
vagus nerve:
11.9
CNGA3
ENSSSCG00000027113
ENSG00000144191
Cyclic nucleotide gated channel alpha 3
Tissue enhanced
Detected in many
retina:
15.1
skin:
20.3
smooth muscle:
19.4
CPSF4L
ENSSSCG00000040611
ENSG00000187959
Cleavage and polyadenylation specific factor 4 like
Tissue enhanced
Detected in many
male glands:
23.9
retina:
20.1
salivary gland:
18.8
CSRNP3
ENSSSCG00000015906
ENSG00000178662
Cysteine and serine rich nuclear protein 3
Tissue enhanced
Detected in many
brain:
27.4
retina:
21.7
DLEC1
ENSSSCG00000011249
ENSG00000008226
Deleted in lung and esophageal cancer 1
Tissue enhanced
Detected in many
fallopian tube:
22.8
retina:
23.7
DOK5
ENSSSCG00000007488
ENSG00000101134
Docking protein 5
Tissue enhanced
Detected in many
brain:
23.1
retina:
16.1
skeletal muscle:
14.9
DOK6
ENSSSCG00000028977
ENSG00000206052
Docking protein 6
Tissue enhanced
Detected in many
brain:
42.3
retina:
19.0
EGFLAM
ENSSSCG00000016848
ENSG00000164318
EGF like, fibronectin type III and laminin G domains
Tissue enhanced
Detected in many
mesothelial tissue:
40.6
retina:
39.6
EML5
ENSSSCG00000002427
ENSG00000165521
Echinoderm microtubule associated protein like 5
Tissue enhanced
Detected in many
brain:
42.5
retina:
29.9
FAIM2
ENSSSCG00000000206
ENSG00000135472
Fas apoptotic inhibitory molecule 2
Tissue enhanced
Detected in many
brain:
65.4
pineal gland:
35.4
retina:
35.6
FAM169A
ENSSSCG00000014076
ENSG00000198780
Family with sequence similarity 169 member A
Tissue enhanced
Detected in many
cornea:
32.5
lens:
32.1
pineal gland:
28.7
pituitary gland:
27.6
retina:
49.7
FAM222A
ENSSSCG00000009927
ENSG00000139438
Family with sequence similarity 222 member A
Tissue enhanced
Detected in many
adrenal gland:
39.2
lens:
42.6
retina:
24.7
FAM57B
ENSSSCG00000037193
ENSG00000149926
Family with sequence similarity 57 member B
Tissue enhanced
Detected in many
pineal gland:
29.6
retina:
85.0
FMN1
ENSSSCG00000040466
ENSG00000248905
Formin 1
Tissue enhanced
Detected in many
retina:
47.2
stomach:
65.7
testis:
48.2
FSCN2
ENSSSCG00000026155
ENSG00000186765
Fascin actin-bundling protein 2, retinal
Tissue enhanced
Detected in many
choroid plexus:
22.9
pineal gland:
21.6
retina:
57.2
GNAO1
ENSSSCG00000034192
ENSG00000087258
G protein subunit alpha o1
Tissue enhanced
Detected in many
brain:
62.7
retina:
26.2
GNAZ
ENSSSCG00000010046
ENSG00000128266
G protein subunit alpha z
Tissue enhanced
Detected in many
brain:
36.7
retina:
20.1
GPC2
ENSSSCG00000007649
ENSG00000213420
Glypican 2
Tissue enhanced
Detected in many
retina:
12.4
testis:
32.2
GPR137C
ENSSSCG00000005036
ENSG00000180998
G protein-coupled receptor 137C
Tissue enhanced
Detected in many
brain:
26.3
heart:
14.8
retina:
19.6
GRIA4
ENSSSCG00000030565
ENSG00000152578
Glutamate ionotropic receptor AMPA type subunit 4
Tissue enhanced
Detected in many
brain:
46.4
epididymis:
33.5
retina:
20.2
IGSF11
ENSSSCG00000011906
ENSG00000144847
Immunoglobulin superfamily member 11
Tissue enhanced
Detected in many
brain:
36.0
retina:
13.2
vagus nerve:
14.8
KIF21A
ENSSSCG00000000779
ENSG00000139116
Kinesin family member 21A
Tissue enhanced
Detected in many
brain:
42.1
lens:
29.2
retina:
31.1
KIRREL3
ENSSSCG00000015234
ENSG00000149571
Kirre like nephrin family adhesion molecule 3
Tissue enhanced
Detected in many
brain:
19.4
retina:
11.7
LHFPL3
ENSSSCG00000035554
ENSG00000187416
LHFPL tetraspan subfamily member 3
Tissue enhanced
Detected in many
brain:
19.5
pineal gland:
52.9
retina:
54.9
LRFN2
ENSSSCG00000001597
ENSG00000156564
Leucine rich repeat and fibronectin type III domain containing 2
Tissue enhanced
Detected in many
brain:
11.4
retina:
20.9
LRRN3
ENSSSCG00000016652
ENSG00000173114
Leucine rich repeat neuronal 3
Tissue enhanced
Detected in many
brain:
27.0
pituitary gland:
20.4
retina:
18.2
LRRTM4
ENSSSCG00000008259
ENSG00000176204
Leucine rich repeat transmembrane neuronal 4
Tissue enhanced
Detected in many
brain:
32.1
retina:
17.9
MAB21L1
ENSSSCG00000009351
ENSG00000180660
Mab-21 like 1
Tissue enhanced
Detected in many
lens:
45.0
retina:
44.9
MAK
ENSSSCG00000001042
ENSG00000111837
Male germ cell associated kinase
Tissue enhanced
Detected in many
retina:
90.6
testis:
31.4
MAP2
ENSSSCG00000016151
ENSG00000078018
Microtubule associated protein 2
Tissue enhanced
Detected in many
brain:
87.1
pineal gland:
30.2
pituitary gland:
23.3
retina:
21.2
MAP6
ENSSSCG00000014860
ENSG00000171533
Microtubule associated protein 6
Tissue enhanced
Detected in many
brain:
25.3
pituitary gland:
16.7
retina:
16.4
MARCH1
ENSSSCG00000039175
ENSG00000145416
Membrane associated ring-CH-type finger 1
Tissue enhanced
Detected in many
lymphoid tissue:
20.1
retina:
20.3
MCF2L2
ENSSSCG00000021749
ENSG00000053524
MCF.2 cell line derived transforming sequence-like 2
Tissue enhanced
Detected in many
pineal gland:
24.3
retina:
54.1
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