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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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42 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
AGPAT3
ENSSSCG00000038081
ENSG00000160216
1-acyl-sn-glycerol-3-phosphate acyltransferase gamma
Tissue enhanced
Detected in all
retina:
64.7
ATP8A2
ENSSSCG00000035421
ENSG00000132932
ATPase phospholipid transporting 8A2
Tissue enhanced
Detected in all
brain:
29.4
pineal gland:
18.8
retina:
56.1
C21orf91
ENSSSCG00000033025
ENSG00000154642
Chromosome 21 open reading frame 91
Tissue enhanced
Detected in all
brain:
38.0
retina:
44.2
C2CD2
ENSSSCG00000025821
ENSG00000157617
C2 calcium dependent domain containing 2
Tissue enhanced
Detected in all
retina:
48.7
CCDC126
ENSSSCG00000029174
ENSG00000169193
Coiled-coil domain containing 126
Tissue enhanced
Detected in all
pineal gland:
42.0
retina:
37.1
DLG4
ENSSSCG00000024285
ENSG00000132535
Discs large MAGUK scaffold protein 4
Tissue enhanced
Detected in all
brain:
59.7
pineal gland:
35.1
retina:
43.1
ELOVL4
ENSSSCG00000028080
ENSG00000118402
ELOVL fatty acid elongase 4
Tissue enhanced
Detected in all
pineal gland:
35.1
retina:
59.9
ERCC2
ENSSSCG00000039929
ENSG00000104884
ERCC excision repair 2, TFIIH core complex helicase subunit
Tissue enhanced
Detected in all
retina:
46.7
FAIM
ENSSSCG00000023814
ENSG00000158234
Fas apoptotic inhibitory molecule 1
Tissue enhanced
Detected in all
retina:
52.1
GLMN
ENSSSCG00000006904
ENSG00000174842
Glomulin, FKBP associated protein
Tissue enhanced
Detected in all
pineal gland:
32.9
retina:
37.6
GNB1
ENSSSCG00000021890
ENSG00000078369
G protein subunit beta 1
Tissue enhanced
Detected in all
retina:
163.4
GNB5
ENSSSCG00000004622
ENSG00000069966
G protein subunit beta 5
Tissue enhanced
Detected in all
brain:
30.7
pineal gland:
42.1
retina:
49.7
HK1
ENSSSCG00000010253
ENSG00000156515
Hexokinase-1
Tissue enhanced
Detected in all
retina:
96.7
IMPDH1
ENSSSCG00000016585
ENSG00000106348
Inosine monophosphate dehydrogenase 1
Tissue enhanced
Detected in all
retina:
58.0
KIAA0556
ENSSSCG00000007814
ENSG00000047578
KIAA0556
Tissue enhanced
Detected in all
retina:
40.2
KIAA1958
ENSSSCG00000005469
ENSG00000165185
KIAA1958
Tissue enhanced
Detected in all
retina:
51.1
LAPTM4B
ENSSSCG00000006083
ENSG00000104341
Lysosomal protein transmembrane 4 beta
Tissue enhanced
Detected in all
ovary:
92.8
retina:
106.6
MAST1
ENSSSCG00000013732
ENSG00000105613
Microtubule associated serine/threonine kinase 1
Tissue enhanced
Detected in all
brain:
17.3
retina:
13.1
MSI1
ENSSSCG00000029365
ENSG00000135097
RNA-binding protein Musashi homolog 1
Tissue enhanced
Detected in all
lens:
43.9
retina:
48.9
na
ENSSSCG00000007322
ENSG00000101079
Tissue enhanced
Detected in all
brain:
46.3
pineal gland:
65.1
retina:
38.4
na
ENSSSCG00000013990
ENSG00000143774
Tissue enhanced
Detected in all
retina:
114.9
na
ENSSSCG00000033159
Tissue enhanced
Detected in all
retina:
98.9
na
ENSSSCG00000034332
ENSG00000167524
Tissue enhanced
Detected in all
retina:
53.8
na
ENSSSCG00000035596
ENSG00000204410
MutS protein homolog 5
Tissue enhanced
Detected in all
epididymis:
32.9
retina:
31.7
na
ENSSSCG00000036410
Tissue enhanced
Detected in all
heart:
31.3
retina:
48.4
na
ENSSSCG00000037511
Tissue enhanced
Detected in all
retina:
55.7
na
ENSSSCG00000038043
Tissue enhanced
Detected in all
adrenal gland:
22.8
retina:
22.6
na
ENSSSCG00000038778
Tissue enhanced
Detected in all
retina:
199.7
na
ENSSSCG00000039473
ENSG00000170832
Tissue enhanced
Detected in all
retina:
53.8
NLRX1
ENSSSCG00000015113
ENSG00000160703
NLR family member X1
Tissue enhanced
Detected in all
retina:
64.9
PIGS
ENSSSCG00000026706
ENSG00000087111
GPI transamidase component PIG-S
Tissue enhanced
Detected in all
retina:
62.4
PLEKHF2
ENSSSCG00000039549
ENSG00000175895
Pleckstrin homology and FYVE domain containing 2
Tissue enhanced
Detected in all
retina:
33.4
PMM1
ENSSSCG00000000061
ENSG00000100417
Phosphomannomutase 1
Tissue enhanced
Detected in all
kidney:
67.1
retina:
55.4
PPIP5K1
ENSSSCG00000004704
ENSG00000168781
Diphosphoinositol pentakisphosphate kinase 1
Tissue enhanced
Detected in all
retina:
44.8
RHOT1
ENSSSCG00000017735
ENSG00000126858
Ras homolog family member T1
Tissue enhanced
Detected in all
heart:
61.8
retina:
61.4
RLBP1
ENSSSCG00000001836
ENSG00000140522
Retinaldehyde binding protein 1
Tissue enhanced
Detected in all
brain:
29.0
retina:
67.7
RTN2
ENSSSCG00000036870
ENSG00000125744
Reticulon-2
Tissue enhanced
Detected in all
retina:
27.6
skeletal muscle:
79.7
STARD7
ENSSSCG00000008132
ENSG00000084090
StAR related lipid transfer domain containing 7
Tissue enhanced
Detected in all
heart:
43.2
retina:
36.7
TRPC1
ENSSSCG00000011681
ENSG00000144935
Short transient receptor potential channel 1
Tissue enhanced
Detected in all
retina:
51.3
TSPAN17
ENSSSCG00000014051
ENSG00000048140
Tetraspanin 17
Tissue enhanced
Detected in all
retina:
44.9
TTLL5
ENSSSCG00000025984
ENSG00000119685
Tubulin tyrosine ligase like 5
Tissue enhanced
Detected in all
pineal gland:
59.1
retina:
71.7
ZNF385A
ENSSSCG00000000292
ENSG00000161642
Zinc finger protein 385A
Tissue enhanced
Detected in all
pineal gland:
70.7
retina:
120.4
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