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Chromosome
1
2
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6
7
8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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232 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PPM1N
ENSSSCG00000037001
ENSG00000213889
Protein phosphatase, Mg2+/Mn2+ dependent 1N (putative)
Tissue enriched
Detected in many
retina:
35.1
IMPG2
ENSSSCG00000031273
ENSG00000081148
Interphotoreceptor matrix proteoglycan 2
Group enriched
Detected in many
pineal gland:
91.2
retina:
94.7
GNB3
ENSSSCG00000000682
ENSG00000111664
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3
Group enriched
Detected in many
pineal gland:
102.6
retina:
90.3
SLC24A1
ENSSSCG00000004937
ENSG00000074621
Solute carrier family 24 member 1
Tissue enriched
Detected in many
retina:
88.9
SLC6A1
ENSSSCG00000011577
ENSG00000157103
Solute carrier family 6 member 1
Group enriched
Detected in many
brain:
52.1
retina:
40.8
TMEM59L
ENSSSCG00000013911
ENSG00000105696
Transmembrane protein 59-like precursor
Group enriched
Detected in many
brain:
64.7
pineal gland:
64.0
pituitary gland:
19.5
retina:
21.7
C1QTNF4
ENSSSCG00000013231
ENSG00000172247
C1q and TNF related 4
Group enriched
Detected in many
brain:
45.2
retina:
11.9
IGSF21
ENSSSCG00000020992
ENSG00000117154
Immunoglobin superfamily member 21
Group enriched
Detected in many
brain:
27.3
pineal gland:
14.6
retina:
11.5
SAMD11
ENSSSCG00000033509
ENSG00000187634
Sterile alpha motif domain containing 11
Tissue enriched
Detected in many
retina:
108.3
TMEM52B
ENSSSCG00000032431
ENSG00000165685
Transmembrane protein 52B
Group enriched
Detected in many
heart:
41.0
kidney:
48.6
retina:
19.4
CABP2
ENSSSCG00000020764
ENSG00000167791
Calcium binding protein 2
Group enriched
Detected in many
pineal gland:
14.4
retina:
26.1
TSPAN10
ENSSSCG00000031531
ENSG00000182612
Tetraspanin 10
Tissue enriched
Detected in many
retina:
76.8
KCNC1
ENSSSCG00000013374
ENSG00000129159
Potassium voltage-gated channel subfamily C member 1
Group enriched
Detected in many
brain:
46.6
retina:
12.5
na
ENSSSCG00000032294
Group enriched
Detected in many
pineal gland:
164.8
retina:
109.0
NAPB
ENSSSCG00000031219
ENSG00000125814
NSF attachment protein beta
Group enriched
Detected in many
brain:
39.5
pineal gland:
19.0
retina:
14.7
SV2A
ENSSSCG00000006666
ENSG00000159164
Synaptic vesicle glycoprotein 2A
Group enriched
Detected in many
brain:
45.9
pineal gland:
30.2
retina:
24.4
TMEM196
ENSSSCG00000015373
ENSG00000173452
Transmembrane protein 196
Group enriched
Detected in many
brain:
12.3
pineal gland:
11.3
retina:
22.4
synovial tissue:
25.2
na
ENSSSCG00000040148
Tissue enriched
Detected in many
retina:
98.0
PACSIN1
ENSSSCG00000027053
ENSG00000124507
Protein kinase C and casein kinase substrate in neurons 1
Group enriched
Detected in many
brain:
36.8
pineal gland:
17.0
retina:
28.3
RGS9
ENSSSCG00000035402
ENSG00000108370
Regulator of G protein signaling 9
Group enriched
Detected in many
brain:
42.3
retina:
40.0
ST6GALNAC5
ENSSSCG00000033425
ENSG00000117069
Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5
Group enriched
Detected in many
brain:
34.8
retina:
9.5
UBAP1L
ENSSSCG00000035506
ENSG00000246922
Ubiquitin associated protein 1 like
Group enriched
Detected in many
brain:
21.3
pineal gland:
13.8
retina:
50.3
UNC119
ENSSSCG00000017761
ENSG00000109103
Unc-119 lipid binding chaperone
Group enriched
Detected in many
pineal gland:
98.7
retina:
195.7
AMPH
ENSSSCG00000024136
ENSG00000078053
Amphiphysin
Group enriched
Detected in many
brain:
39.6
lens:
56.5
pineal gland:
19.6
pituitary gland:
21.3
retina:
32.4
CDHR1
ENSSSCG00000010348
ENSG00000148600
Cadherin related family member 1
Group enriched
Detected in many
brain:
22.3
pineal gland:
24.1
retina:
71.5
ELOVL2
ENSSSCG00000001045
ENSG00000197977
ELOVL fatty acid elongase 2
Group enriched
Detected in many
brain:
34.3
pineal gland:
12.8
retina:
14.3
testis:
19.2
vagus nerve:
25.6
ESPN
ENSSSCG00000003374
ENSG00000187017
Espin
Group enriched
Detected in many
epididymis:
92.1
retina:
24.2
testis:
77.5
GLDC
ENSSSCG00000005199
ENSG00000178445
Glycine decarboxylase
Group enriched
Detected in many
epididymis:
38.7
lens:
35.9
liver:
19.2
retina:
14.6
KCNAB2
ENSSSCG00000020749
ENSG00000069424
Potassium voltage-gated channel subfamily A regulatory beta subunit 2
Group enriched
Detected in many
brain:
55.2
retina:
14.5
na
ENSSSCG00000032267
Tissue enriched
Detected in many
retina:
30.4
PLEKHB1
ENSSSCG00000014827
ENSG00000021300
Pleckstrin homology domain-containing family B member 1
Group enriched
Detected in many
brain:
163.6
pineal gland:
61.6
retina:
103.4
vagus nerve:
86.5
PROM1
ENSSSCG00000008745
ENSG00000007062
Prominin 1
Group enriched
Detected in many
male glands:
120.2
retina:
46.7
upper respiratory system:
41.6
RAB3A
ENSSSCG00000013897
ENSG00000105649
Ras-related protein Rab-3A
Group enriched
Detected in many
brain:
78.0
pineal gland:
32.7
retina:
28.3
RAX2
ENSSSCG00000032429
ENSG00000173976
Retina and anterior neural fold homeobox 2
Tissue enriched
Detected in many
retina:
77.4
RPGRIP1
ENSSSCG00000002129
ENSG00000092200
RPGR interacting protein 1
Group enriched
Detected in many
epididymis:
15.0
retina:
21.4
testis:
51.9
SCG3
ENSSSCG00000004630
ENSG00000104112
Secretogranin III
Group enriched
Detected in many
brain:
28.7
pineal gland:
32.1
pituitary gland:
24.0
retina:
17.0
SCN8A
ENSSSCG00000000228
ENSG00000196876
Sodium voltage-gated channel alpha subunit 8
Group enriched
Detected in many
brain:
34.5
lens:
11.0
pineal gland:
11.7
retina:
16.6
SPTBN5
ENSSSCG00000004736
ENSG00000137877
Spectrin beta, non-erythrocytic 5
Group enriched
Detected in many
retina:
30.8
vagus nerve:
25.1
ATP1B2
ENSSSCG00000017951
ENSG00000129244
ATPase Na+/K+ transporting subunit beta 2
Group enriched
Detected in many
adrenal gland:
44.0
brain:
150.3
pineal gland:
114.3
retina:
78.2
DLG2
ENSSSCG00000014904
ENSG00000150672
Discs large MAGUK scaffold protein 2
Group enriched
Detected in many
brain:
45.5
pineal gland:
23.4
retina:
15.3
ENO2
ENSSSCG00000028373
ENSG00000111674
Enolase 2
Group enriched
Detected in many
brain:
98.7
pineal gland:
66.7
pituitary gland:
33.0
retina:
46.9
GALNT13
ENSSSCG00000022671
ENSG00000144278
Polypeptide N-acetylgalactosaminyltransferase 13
Group enriched
Detected in many
brain:
36.2
pineal gland:
17.8
pituitary gland:
23.4
retina:
17.7
synovial tissue:
11.8
GPR179
ENSSSCG00000020884
ENSG00000277399
G protein-coupled receptor 179
Group enriched
Detected in many
lens:
7.3
retina:
26.4
KCNB1
ENSSSCG00000007462
ENSG00000158445
Potassium voltage-gated channel subfamily B member 1
Tissue enriched
Detected in many
retina:
78.5
KCNC3
ENSSSCG00000003214
ENSG00000131398
Potassium voltage-gated channel subfamily C member 3
Group enriched
Detected in many
brain:
35.1
retina:
10.2
LRIT3
ENSSSCG00000009135
ENSG00000183423
Leucine rich repeat, Ig-like and transmembrane domains 3
Tissue enriched
Detected in many
retina:
49.8
MDGA1
ENSSSCG00000001582
ENSG00000112139
MAM domain containing glycosylphosphatidylinositol anchor 1
Group enriched
Detected in many
brain:
14.0
ovary:
22.6
pineal gland:
23.0
retina:
6.7
MEGF9
ENSSSCG00000005506
ENSG00000106780
Multiple EGF like domains 9
Group enriched
Detected in many
lens:
106.8
retina:
33.9
vagus nerve:
52.2
MLLT11
ENSSSCG00000030278
ENSG00000213190
Protein AF1q
Group enriched
Detected in many
brain:
62.9
pineal gland:
53.3
retina:
20.3
na
ENSSSCG00000000713
Group enriched
Detected in many
cornea:
26.1
heart:
10.5
ovary:
10.3
pineal gland:
9.7
retina:
26.1
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