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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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850 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABCC3
ENSSSCG00000017561
ENSG00000108846
ATP binding cassette subfamily C member 3
Tissue enhanced
Detected in many
epididymis:
30.2
male glands:
39.6
ABHD17C
ENSSSCG00000001782
ENSG00000136379
Abhydrolase domain containing 17C
Tissue enhanced
Detected in many
large intestine:
39.8
male glands:
50.9
ACACB
ENSSSCG00000009937
ENSG00000076555
Acetyl-CoA carboxylase 2 precursor
Tissue enhanced
Detected in many
heart:
31.7
male glands:
64.1
salivary gland:
45.8
skeletal muscle:
31.3
ACER2
ENSSSCG00000034213
ENSG00000177076
Alkaline ceramidase 2
Tissue enhanced
Detected in many
adipose tissue:
35.7
male glands:
43.4
ACTR10
ENSSSCG00000022299
ENSG00000131966
Actin related protein 10 homolog
Tissue enhanced
Detected in all
male glands:
84.2
ADARB2
ENSSSCG00000011160
ENSG00000185736
Adenosine deaminase, RNA specific B2 (inactive)
Tissue enhanced
Detected in many
brain:
20.3
male glands:
16.5
ADGRA1
ENSSSCG00000039199
ENSG00000197177
Adhesion G protein-coupled receptor A1
Tissue enhanced
Detected in many
male glands:
31.0
ADGRF1
ENSSSCG00000001726
ENSG00000153292
Adhesion G-protein coupled receptor F1 precursor
Tissue enhanced
Detected in all
male glands:
54.4
ADI1
ENSSSCG00000029161
ENSG00000182551
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
Tissue enhanced
Detected in all
male glands:
66.8
ADORA1
ENSSSCG00000021059
ENSG00000163485
Adenosine receptor A1
Tissue enhanced
Detected in many
adipose tissue:
21.7
brain:
24.7
male glands:
44.1
ADRA1D
ENSSSCG00000007139
ENSG00000171873
Alpha-1D adrenergic receptor
Tissue enhanced
Detected in many
brain:
11.8
ductus deferens:
12.7
male glands:
12.9
ADRB1
ENSSSCG00000010647
ENSG00000043591
Beta-1 adrenergic receptor
Tissue enhanced
Detected in many
cartilage:
21.2
heart:
30.9
lymphoid tissue:
27.4
male glands:
54.3
AFF2
ENSSSCG00000012730
ENSG00000155966
AF4/FMR2 family member 2
Tissue enhanced
Detected in many
epididymis:
37.8
male glands:
53.3
AGFG2
ENSSSCG00000007664
ENSG00000106351
ArfGAP with FG repeats 2
Tissue enhanced
Detected in all
esophagus:
39.0
male glands:
37.6
AGTR2
ENSSSCG00000012600
ENSG00000180772
Angiotensin II receptor type 2
Tissue enhanced
Detected in some
cervix:
6.4
endometrium:
8.4
fallopian tube:
9.5
male glands:
13.3
AKR1B1
ENSSSCG00000040608
ENSG00000085662
Aldose reductase
Tissue enhanced
Detected in all
kidney:
55.9
lens:
113.2
male glands:
56.6
ALDH18A1
ENSSSCG00000010495
ENSG00000059573
Aldehyde dehydrogenase 18 family member A1
Tissue enhanced
Detected in many
male glands:
70.8
ALG5
ENSSSCG00000009360
ENSG00000120697
Dolichyl-phosphate beta-glucosyltransferase
Tissue enhanced
Detected in all
male glands:
55.4
AMER2
ENSSSCG00000022678
ENSG00000165566
APC membrane recruitment protein 2
Tissue enhanced
Detected in many
brain:
45.6
male glands:
11.6
pineal gland:
10.3
AMIGO3
ENSSSCG00000011389
ENSG00000176020
Mannose-1-phosphate guanyltransferase beta
Tissue enhanced
Detected in all
male glands:
37.8
AMOT
ENSSSCG00000012591
ENSG00000126016
Angiomotin
Tissue enhanced
Detected in all
epididymis:
59.2
male glands:
93.4
skeletal muscle:
52.8
AMOTL1
ENSSSCG00000014960
ENSG00000166025
Angiomotin like 1
Tissue enhanced
Detected in all
male glands:
93.3
ANKEF1
ENSSSCG00000007063
ENSG00000132623
Ankyrin repeat and EF-hand domain containing 1
Tissue enhanced
Detected in some
male glands:
18.0
testis:
35.6
ANKRD28
ENSSSCG00000011194
ENSG00000206560
Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A
Tissue enhanced
Detected in all
male glands:
55.5
ANKRD55
ENSSSCG00000016917
ENSG00000164512
Ankyrin repeat domain 55
Tissue enhanced
Detected in many
male glands:
29.8
salivary gland:
32.9
ANKS4B
ENSSSCG00000007850
ENSG00000175311
Ankyrin repeat and sterile alpha motif domain containing 4B
Tissue enhanced
Detected in some
large intestine:
27.2
liver:
35.4
male glands:
24.8
small intestine:
28.6
ANO1
ENSSSCG00000024158
ENSG00000131620
Anoctamin 1
Tissue enhanced
Detected in many
liver:
46.1
male glands:
42.1
ANPEP
ENSSSCG00000001849
ENSG00000166825
Aminopeptidase N
Tissue enhanced
Detected in many
male glands:
57.2
small intestine:
208.3
AP1M2
ENSSSCG00000025838
ENSG00000129354
Adaptor related protein complex 1 mu 2 subunit
Tissue enhanced
Detected in many
male glands:
25.6
AP1S3
ENSSSCG00000040847
ENSG00000152056
Adaptor related protein complex 1 sigma 3 subunit
Tissue enhanced
Detected in many
male glands:
31.5
APIP
ENSSSCG00000013299
ENSG00000149089
APAF1 interacting protein
Tissue enhanced
Detected in all
male glands:
73.4
AQP5
ENSSSCG00000000211
ENSG00000161798
Aquaporin-5
Tissue enhanced
Detected in many
cornea:
35.3
male glands:
97.9
salivary gland:
42.2
upper respiratory system:
40.6
ARCN1
ENSSSCG00000030053
ENSG00000095139
Archain 1
Tissue enhanced
Detected in all
male glands:
114.8
ARF4
ENSSSCG00000031791
ENSG00000168374
ADP ribosylation factor 4
Tissue enhanced
Detected in all
male glands:
78.3
ARHGEF38
ENSSSCG00000021764
ENSG00000236699
Rho guanine nucleotide exchange factor 38
Tissue enhanced
Detected in many
epididymis:
22.1
male glands:
29.4
ARL1
ENSSSCG00000000870
ENSG00000120805
ADP ribosylation factor like GTPase 1
Tissue enhanced
Detected in all
male glands:
77.0
ARMC10
ENSSSCG00000028444
ENSG00000170632
Armadillo repeat-containing protein 10
Tissue enhanced
Detected in all
male glands:
71.9
ART5
ENSSSCG00000014798
ENSG00000167311
ADP-ribosyltransferase 5
Tissue enhanced
Detected in some
male glands:
9.5
mouth:
7.3
skeletal muscle:
31.8
ARTN
ENSSSCG00000034778
ENSG00000117407
Artemin
Tissue enhanced
Detected in many
ductus deferens:
7.4
male glands:
11.4
penis:
6.9
ASGR2
ENSSSCG00000017932
ENSG00000161944
Asialoglycoprotein receptor 2
Tissue enhanced
Detected in many
liver:
68.8
male glands:
21.1
ASPG
ENSSSCG00000039553
ENSG00000166183
Asparaginase
Tissue enhanced
Detected in many
liver:
7.6
male glands:
8.2
mesothelial tissue:
9.5
skin:
8.5
ASPH
ENSSSCG00000025087
ENSG00000198363
Aspartate beta-hydroxylase
Tissue enhanced
Detected in all
male glands:
108.5
ATG4A
ENSSSCG00000012569
ENSG00000101844
Autophagy related 4A cysteine peptidase
Tissue enhanced
Detected in all
male glands:
36.5
ATOX1
ENSSSCG00000026414
Copper transport protein ATOX1
Tissue enhanced
Detected in all
male glands:
134.0
ATP1A1
ENSSSCG00000006740
ENSG00000163399
Sodium/potassium-transporting ATPase subunit alpha-1 precursor
Tissue enhanced
Detected in all
kidney:
127.3
male glands:
141.9
ATP1B1
ENSSSCG00000006296
ENSG00000143153
Sodium/potassium-transporting ATPase subunit beta-1
Tissue enhanced
Detected in all
kidney:
110.2
male glands:
224.2
ATP6V0A1
ENSSSCG00000017401
ENSG00000033627
ATPase H+ transporting V0 subunit a1
Tissue enhanced
Detected in all
male glands:
58.2
ATP6V1C2
ENSSSCG00000008634
ENSG00000143882
ATPase H+ transporting V1 subunit C2
Tissue enhanced
Detected in many
brain:
22.5
epididymis:
24.1
male glands:
48.7
AUTS2
ENSSSCG00000007727
ENSG00000158321
Autism susceptibility gene 2 protein
Tissue enhanced
Detected in many
cartilage:
165.4
male glands:
64.3
AVPR2
ENSSSCG00000012789
ENSG00000126895
Vasopressin V2 receptor
Tissue enhanced
Detected in many
ductus deferens:
10.9
kidney:
16.5
male glands:
19.8
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