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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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243 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SPMI
ENSSSCG00000002977
Seminal plasma sperm motility inhibitor precursor
Tissue enriched
Detected in some
male glands:
2013.1
PSP-II
ENSSSCG00000002978
Major seminal plasma glycoprotein PSP-II precursor
Tissue enriched
Detected in some
male glands:
3633.2
BSP1
ENSSSCG00000003053
Seminal plasma protein pB1 precursor
Tissue enriched
Detected in some
male glands:
499.5
na
ENSSSCG00000036361
Group enriched
Detected in some
heart:
13.5
male glands:
15.3
testis:
23.5
HOXB13
ENSSSCG00000017541
ENSG00000159184
Homeobox B13
Group enriched
Detected in some
large intestine:
46.2
male glands:
70.8
na
ENSSSCG00000002980
Tissue enriched
Detected in some
male glands:
2217.0
na
ENSSSCG00000037112
Tissue enriched
Detected in some
male glands:
2205.1
AQP2
ENSSSCG00000021193
ENSG00000167580
Aquaporin-2
Group enriched
Detected in some
kidney:
212.6
male glands:
103.9
NPPC
ENSSSCG00000026852
ENSG00000163273
C-type natriuretic peptide CNP-22 CNP-29 CNP-53
Tissue enriched
Detected in some
male glands:
300.0
na
ENSSSCG00000031357
Group enriched
Detected in some
kidney:
4.4
lymphoid tissue:
1.7
male glands:
4.0
na
ENSSSCG00000029257
Sperm-associated acrosin inhibitor precursor
Tissue enriched
Detected in some
male glands:
566.2
LMAN1L
ENSSSCG00000001899
ENSG00000140506
Lectin, mannose binding 1 like
Group enriched
Detected in some
esophagus:
79.5
male glands:
267.8
salivary gland:
90.9
SP8
ENSSSCG00000031078
ENSG00000164651
Sp8 transcription factor
Group enriched
Detected in some
brain:
27.7
male glands:
31.4
upper respiratory system:
19.0
MSMB
ENSSSCG00000010400
ENSG00000263639
Beta-microseminoprotein precursor
Tissue enriched
Detected in some
male glands:
2458.8
na
ENSSSCG00000033610
Group enriched
Detected in some
esophagus:
87.0
male glands:
118.0
upper respiratory system:
309.0
na
ENSSSCG00000039115
Group enriched
Detected in some
brain:
2.2
male glands:
1.8
testis:
2.5
na
ENSSSCG00000036834
Tissue enriched
Detected in some
male glands:
44.4
na
ENSSSCG00000037442
Group enriched
Detected in some
male glands:
1.5
mesothelial tissue:
1.2
NKX3-1
ENSSSCG00000031924
ENSG00000167034
NK3 homeobox 1
Tissue enriched
Detected in some
male glands:
206.7
na
ENSSSCG00000029114
Group enriched
Detected in some
liver:
3.6
male glands:
11.8
na
ENSSSCG00000031411
Group enriched
Detected in some
cornea:
4.3
male glands:
1.3
FCGBP
ENSSSCG00000027515
ENSG00000275395
Fc fragment of IgG binding protein
Tissue enriched
Detected in some
male glands:
762.8
na
ENSSSCG00000031438
ENSG00000198678
Group enriched
Detected in some
male glands:
2.8
testis:
2.0
na
ENSSSCG00000032851
ENSG00000170791
Tissue enriched
Detected in some
male glands:
84.9
na
ENSSSCG00000038015
Group enriched
Detected in some
male glands:
3.2
pineal gland:
2.8
testis:
3.7
na
ENSSSCG00000038780
ENSG00000178222
Group enriched
Detected in some
breast:
6.3
cartilage:
10.7
male glands:
15.0
testis:
17.2
ADAM29
ENSSSCG00000009697
ENSG00000168594
ADAM metallopeptidase domain 29
Group enriched
Detected in some
epididymis:
25.8
male glands:
23.2
testis:
32.5
na
ENSSSCG00000034042
ENSG00000154079
Group enriched
Detected in some
male glands:
2.9
testis:
8.3
na
ENSSSCG00000040128
Group enriched
Detected in some
kidney:
7.2
male glands:
23.7
EVX1
ENSSSCG00000016696
ENSG00000106038
Even-skipped homeobox 1
Group enriched
Detected in some
male glands:
32.6
urinary bladder:
9.2
GRIN2C
ENSSSCG00000023151
ENSG00000161509
Glutamate ionotropic receptor NMDA type subunit 2C
Group enriched
Detected in some
brain:
31.0
male glands:
35.5
LHFPL1
ENSSSCG00000012590
ENSG00000182508
LHFPL tetraspan subfamily member 1
Tissue enriched
Detected in some
male glands:
32.8
na
ENSSSCG00000040084
ENSG00000183389
Group enriched
Detected in some
liver:
2.5
male glands:
9.6
CHRND
ENSSSCG00000016287
ENSG00000135902
Cholinergic receptor nicotinic delta subunit
Group enriched
Detected in some
brain:
2.9
male glands:
4.1
mouth:
6.1
skeletal muscle:
5.1
CRISP3
ENSSSCG00000024347
ENSG00000096006
Cysteine rich secretory protein 3
Group enriched
Detected in some
male glands:
265.0
upper respiratory system:
115.5
HSD17B6
ENSSSCG00000027854
ENSG00000025423
Hydroxysteroid 17-beta dehydrogenase 6
Group enriched
Detected in some
brain:
22.5
liver:
82.6
male glands:
22.4
MYF5
ENSSSCG00000000937
ENSG00000111049
Myogenic factor 5
Group enriched
Detected in some
male glands:
5.5
mouth:
10.6
skeletal muscle:
15.2
synovial tissue:
4.3
na
ENSSSCG00000022995
Group enriched
Detected in some
ductus deferens:
4.3
male glands:
8.8
na
ENSSSCG00000031137
Group enriched
Detected in some
male glands:
4.6
small intestine:
6.1
na
ENSSSCG00000032724
Tissue enriched
Detected in some
male glands:
14.5
na
ENSSSCG00000038274
Tissue enriched
Detected in some
male glands:
24.1
na
ENSSSCG00000039122
Group enriched
Detected in some
breast:
1.2
male glands:
2.9
skin:
2.8
testis:
4.9
SLC28A3
ENSSSCG00000010960
ENSG00000197506
Solute carrier family 28 member 3
Tissue enriched
Detected in some
male glands:
65.7
SLC30A2
ENSSSCG00000026386
ENSG00000158014
Zinc transporter 2
Tissue enriched
Detected in some
male glands:
158.7
DEFB135
ENSSSCG00000039911
ENSG00000205883
Defensin beta 135
Group enriched
Detected in some
epididymis:
100.1
male glands:
40.0
GLRA3
ENSSSCG00000009698
ENSG00000145451
Glycine receptor alpha 3
Group enriched
Detected in some
epididymis:
55.6
male glands:
41.9
GRIN1
ENSSSCG00000039834
ENSG00000176884
Glutamate ionotropic receptor NMDA type subunit 1
Group enriched
Detected in some
brain:
48.8
male glands:
23.9
KCNK9
ENSSSCG00000033397
ENSG00000169427
Potassium two pore domain channel subfamily K member 9
Group enriched
Detected in some
adrenal gland:
6.8
brain:
18.3
male glands:
15.5
LHX1
ENSSSCG00000017692
ENSG00000273706
LIM homeobox 1
Group enriched
Detected in some
brain:
13.0
kidney:
25.7
male glands:
21.8
LRRC30
ENSSSCG00000023672
ENSG00000206422
Leucine rich repeat containing 30
Group enriched
Detected in some
lens:
12.9
male glands:
9.0
skeletal muscle:
20.7
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