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Chromosome
1
2
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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155 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ALS2CR12
ENSSSCG00000016105
ENSG00000155749
Amyotrophic lateral sclerosis 2 chromosome region 12
Tissue enhanced
Detected in some
choroid plexus:
30.1
fallopian tube:
56.5
lung:
18.3
upper respiratory system:
22.7
ANKFN1
ENSSSCG00000017609
ENSG00000153930
Ankyrin repeat and fibronectin type III domain containing 1
Tissue enhanced
Detected in some
brain:
13.5
fallopian tube:
32.7
lung:
17.0
upper respiratory system:
20.1
APOBEC4
ENSSSCG00000015561
ENSG00000173627
Apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4
Tissue enhanced
Detected in some
fallopian tube:
31.9
lung:
10.4
testis:
8.9
upper respiratory system:
19.0
BTG4
ENSSSCG00000015020
ENSG00000137707
BTG anti-proliferation factor 4
Tissue enhanced
Detected in some
choroid plexus:
7.3
fallopian tube:
15.4
lung:
6.3
lymphoid tissue:
6.2
upper respiratory system:
8.6
C11orf88
ENSSSCG00000015021
ENSG00000183644
Chromosome 11 open reading frame 88
Tissue enhanced
Detected in some
choroid plexus:
19.9
fallopian tube:
35.8
lung:
16.1
testis:
25.1
upper respiratory system:
28.2
C20orf85
ENSSSCG00000007510
ENSG00000124237
Uncharacterized protein C20orf85 homolog
Tissue enhanced
Detected in some
fallopian tube:
103.3
lung:
54.0
upper respiratory system:
95.4
C2orf50
ENSSSCG00000034536
ENSG00000150873
Chromosome 2 open reading frame 50
Tissue enhanced
Detected in some
fallopian tube:
2.8
lung:
1.2
upper respiratory system:
2.8
CCDC153
ENSSSCG00000015109
ENSG00000248712
Coiled-coil domain containing 153
Tissue enhanced
Detected in some
brain:
7.0
fallopian tube:
16.2
lung:
6.3
pituitary gland:
8.4
upper respiratory system:
12.2
CCDC17
ENSSSCG00000021448
ENSG00000159588
Coiled-coil domain containing 17
Tissue enhanced
Detected in some
fallopian tube:
24.9
lung:
20.0
testis:
21.4
upper respiratory system:
25.7
CCDC40
ENSSSCG00000017158
ENSG00000141519
Coiled-coil domain containing 40
Tissue enhanced
Detected in some
fallopian tube:
26.3
lung:
12.8
testis:
16.3
upper respiratory system:
19.8
CD69
ENSSSCG00000000653
ENSG00000110848
Early activation antigen CD69
Tissue enhanced
Detected in some
large intestine:
11.4
lung:
15.8
lymphoid tissue:
28.4
upper respiratory system:
14.3
CFAP161
ENSSSCG00000001786
ENSG00000156206
Cilia- and flagella-associated protein 161
Tissue enhanced
Detected in some
brain:
11.3
choroid plexus:
17.1
fallopian tube:
26.6
lung:
11.6
upper respiratory system:
19.7
CFAP73
ENSSSCG00000009875
ENSG00000186710
Cilia and flagella associated protein 73
Tissue enhanced
Detected in some
choroid plexus:
10.2
fallopian tube:
27.9
lung:
12.1
upper respiratory system:
22.7
CLRN2
ENSSSCG00000023941
ENSG00000249581
Clarin 2
Tissue enhanced
Detected in some
brain:
1.1
lung:
1.8
CNGA2
ENSSSCG00000012753
ENSG00000183862
Cyclic nucleotide gated channel alpha 2
Tissue enhanced
Detected in some
lung:
2.5
pituitary gland:
6.9
upper respiratory system:
2.4
DNAI2
ENSSSCG00000024357
ENSG00000171595
Dynein axonemal intermediate chain 2
Tissue enhanced
Detected in some
choroid plexus:
13.5
fallopian tube:
27.7
lung:
12.1
testis:
25.2
upper respiratory system:
19.2
DRC7
ENSSSCG00000002817
ENSG00000159625
Dynein regulatory complex subunit 7
Tissue enhanced
Detected in some
fallopian tube:
28.6
lung:
19.0
testis:
21.3
upper respiratory system:
26.9
ECT2L
ENSSSCG00000004147
ENSG00000203734
Epithelial cell transforming 2 like
Tissue enhanced
Detected in some
choroid plexus:
9.6
fallopian tube:
31.4
lung:
8.4
upper respiratory system:
18.1
EFCAB12
ENSSSCG00000011587
ENSG00000172771
EF-hand calcium-binding domain-containing protein 12
Tissue enhanced
Detected in some
choroid plexus:
28.6
fallopian tube:
28.4
lung:
15.9
upper respiratory system:
30.7
GPR25
ENSSSCG00000037641
ENSG00000170128
G protein-coupled receptor 25
Tissue enhanced
Detected in some
lung:
12.1
stomach:
29.2
upper respiratory system:
11.9
HYDIN
ENSSSCG00000040973
ENSG00000157423
HYDIN, axonemal central pair apparatus protein
Tissue enhanced
Detected in some
choroid plexus:
18.5
fallopian tube:
61.3
lung:
21.1
upper respiratory system:
31.1
IL27
ENSSSCG00000039300
ENSG00000197272
Interleukin-27 subunit alpha precursor
Tissue enhanced
Detected in some
lung:
3.5
lymphoid tissue:
7.5
IQCA1
ENSSSCG00000016321
ENSG00000132321
IQ motif containing with AAA domain 1
Tissue enhanced
Detected in some
fallopian tube:
38.0
lung:
15.6
upper respiratory system:
19.5
LOXHD1
ENSSSCG00000004503
ENSG00000167210
Lipoxygenase homology domains 1
Tissue enhanced
Detected in some
lung:
4.4
stomach:
9.9
MS4A1
ENSSSCG00000021812
ENSG00000156738
B-lymphocyte antigen CD20
Tissue enhanced
Detected in some
lung:
28.1
lymphoid tissue:
79.8
small intestine:
31.3
upper respiratory system:
52.6
MZB1
ENSSSCG00000029239
ENSG00000170476
Marginal zone B and B1 cell specific protein
Tissue enhanced
Detected in some
large intestine:
16.3
lung:
16.0
lymphoid tissue:
14.3
small intestine:
18.5
stomach:
20.8
upper respiratory system:
32.6
na
ENSSSCG00000000615
Tissue enhanced
Detected in some
kidney:
3.8
lung:
3.4
testis:
4.2
upper respiratory system:
3.1
na
ENSSSCG00000000639
Tissue enhanced
Detected in some
liver:
4.9
lung:
4.5
lymphoid tissue:
7.7
na
ENSSSCG00000000640
ENSG00000134545,ENSG00000205809
Tissue enhanced
Detected in some
lung:
5.7
lymphoid tissue:
9.2
na
ENSSSCG00000000642
ENSG00000134539
Tissue enhanced
Detected in some
large intestine:
8.8
lung:
7.0
lymphoid tissue:
13.2
na
ENSSSCG00000002409
Tissue enhanced
Detected in some
choroid plexus:
3.4
lung:
2.0
pineal gland:
2.3
na
ENSSSCG00000003954
Tissue enhanced
Detected in some
fallopian tube:
39.1
lung:
19.3
testis:
30.2
upper respiratory system:
58.1
na
ENSSSCG00000004187
Tissue enhanced
Detected in some
brain:
1.2
epididymis:
1.7
lung:
1.7
testis:
2.4
na
ENSSSCG00000005209
Tissue enhanced
Detected in some
lung:
3.7
lymphoid tissue:
5.0
na
ENSSSCG00000005413
Tissue enhanced
Detected in some
liver:
3.5
lung:
4.9
na
ENSSSCG00000005419
ENSG00000179055
Tissue enhanced
Detected in some
lung:
8.9
na
ENSSSCG00000006188
ENSG00000230667
Tissue enhanced
Detected in some
esophagus:
2.2
lung:
1.3
lymphoid tissue:
2.5
small intestine:
1.4
upper respiratory system:
1.8
na
ENSSSCG00000008205
Tissue enhanced
Detected in some
bone marrow:
2.2
brain:
3.0
lung:
2.7
small intestine:
1.4
upper respiratory system:
2.5
na
ENSSSCG00000008661
Tissue enhanced
Detected in some
lung:
2.4
small intestine:
3.3
upper respiratory system:
10.6
na
ENSSSCG00000008851
Tissue enhanced
Detected in some
fallopian tube:
2.3
lung:
1.3
upper respiratory system:
1.3
na
ENSSSCG00000009936
ENSG00000139445
Tissue enhanced
Detected in some
lung:
5.4
male glands:
5.2
upper respiratory system:
13.3
na
ENSSSCG00000011718
ENSG00000130255
Tissue enhanced
Detected in some
lung:
2.9
stomach:
3.4
testis:
3.1
na
ENSSSCG00000012052
Tissue enhanced
Detected in some
adipose tissue:
1.5
lung:
1.3
lymphoid tissue:
2.0
mesothelial tissue:
1.3
stomach:
1.7
na
ENSSSCG00000013654
ENSG00000105371
Tissue enhanced
Detected in some
dura mater:
6.6
lung:
8.4
lymphoid tissue:
6.8
mesothelial tissue:
6.8
na
ENSSSCG00000016152
Tissue enhanced
Detected in some
aorta:
2.0
lung:
1.5
lymphoid tissue:
1.0
testis:
1.1
na
ENSSSCG00000017610
Tissue enhanced
Detected in some
brain:
12.2
fallopian tube:
28.2
lung:
17.6
upper respiratory system:
24.6
na
ENSSSCG00000017963
Tissue enhanced
Detected in some
fallopian tube:
13.6
lung:
16.5
testis:
27.9
upper respiratory system:
23.0
na
ENSSSCG00000018015
Tissue enhanced
Detected in some
fallopian tube:
55.9
lung:
21.1
upper respiratory system:
31.1
na
ENSSSCG00000020695
Tissue enhanced
Detected in some
lung:
13.3
skin:
7.1
stomach:
25.1
upper respiratory system:
7.2
na
ENSSSCG00000020750
Tissue enhanced
Detected in some
large intestine:
2.2
lung:
2.8
small intestine:
2.3
upper respiratory system:
8.2
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